BAC Information

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BAC

Clone NameMSMg01-500N12
Chromosome9 (Build37)
Map Location 37,873,031 - 37,873,580
singlet/doubletsinglet
Overlap genenone
Upstream genePknox2, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885
Downstream geneOlfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500N12.T7 (MSMg01no500_n12.b1)MSMg01-500N12.TJ (MSMg01no500_n12.g1)
ACCAG576585AG576586
length722689
length of high quality
(start - end)
240 (74 - 313)551 (63 - 613)
definitionCHROMAT_FILE: MSMg01no500_n12.b1 PHD_FILE: MSMg01no500_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:33 2005CHROMAT_FILE: MSMg01no500_n12.g1 PHD_FILE: MSMg01no500_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGA
ATTCANAAAATAACTCAAACAAAAACAAATCATCAGATCCTACTATAAAA
GCCTATACAAAAAAACCAACCAACCAAAAAAAAACAAAAAACAAAAAAAA
CAAAAAAACAAACAAACAAACAAAAAAAAAACAGAAAACAAAAAACAAAA
GAATAATCCTGGATAATCTAGATGAAATAGATGGCTTTCTAGACAGATGT
CACATACCATAATTAAATCAAGAGCAGGTAAAGTATCTAAACAGGCCCAT
ATCACACAAGGATATATATAGAAGTCAGTAAAAACTTTCCAACCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACCAGGGCCAGATGGAT
TTAGTGCAGAATTCTATTAGACCTTCAAAGAAGACCTGATACCAATTTTC
CTCAAACTATTTAATAAAATAGAAAAAGAAAGAAGACTACCTAACTCATC
TATGAAGCCACAATTACTCGGATACGTAATCCTCACAAGGACCCAACCAA
AAAAGAGAACCTCAGACCAATCTCGCTTATGAATATTGATGCAAAAATAC
TCAATAAAATTCTTACAAACAGAATCCAAGAACACATCAAAGCGATCATT
CACCATGATCAAGGAGGCTTCATCCCAGGGATGCAAGGGTGGTTTAATAT
ATGAAGATCCATTAACATAATC
CTGGAGGCCGCCTGGCTTCATAAAAAAGGNGACACTATAGAAGTTCCTGC
AAAAATCAAGGNAACCAGAAGTCATGCAATCTAGGTCATTATGTCTGAGA
CCCATGCACAAGCTGGTGAATATATTAAAAGCCTTCTTTATGAAGACAGG
ATAAATTGTTGAGCTATGTGTAAAATAGCAGTATGTATATACATATAATT
TGATCCTATTAATATGATTCTAACTAGTATGTGATTTCATGTCGGTGTAG
GTTGACAGCTTCCTTTGTCACTTAGTGATTTGAAATGCAAGATCTTGCTT
TACTAATCTTGATATTGCTGTCTTAGAACAGTTCCACAGTCTTCACTTTC
TTTGCAGATTAGTGGTTATCATGAAGATGTGTTCCTGCAGGAGCTTTTGC
CCACGCCCCATTCCTCAGGACAGTGGACTGACTGTAATAGTACTCTTAAT
GATGTTATTAGTTTAAAACTCATATAAGTAAATTTGCAATGTTAAGATGG
GCCCTAAACCAATCTAACTAGTGTCCTTATAAAAAAAAAAGATGGGGACA
GATATAGAACAGGAATGAACATACACATAGGAAGGCACAGGTGAGAACAC
AGCAAAAGCACAGACATCTCTAAACCAAACAGTGAAGTCTTAGAAGAAAT
AGAACCTCCACTTGATGGTGGAATTCTAGCCTCTGGAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_n12.g1 MSMg01no500_n12.g1 CHROMAT_FILE:
MSMg01no500_n12.g1 PHD_FILE: MSMg01no500_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:33 2005
         (551 letters)



>mm_chr9_37872831_37873781
          Length = 951

 Score =  878 bits (454), Expect = 0.0
 Identities = 526/550 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaccagaagtcatgcaatctaggtcattatgtctgagacccatgcacaagctggtgaata 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 201 aaccagaagtcatgcaatctaggtcattatgtctgagactcatgcacaagctgatgaata 260

                                                                       
Query: 61  tattaaaagccttctttatgaagacaggataaattgttgagctatgtgtaaaatagcagt 120
           |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 261 tattgaaagccttctttatgaagataggataaattgttgagctatgtgtaaaataggagt 320

                                                                       
Query: 121 atgtatatacatataatttgatcctattaatatgattctaactagtatgtgatttcatgt 180
           || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatatatacatataatttgattctattaatatgattctaactagtatgtgatttcatgt 380

                                                                       
Query: 181 cggtgtaggttgacagcttcctttgtcacttagtgatttgaaatgcaagatcttgcttta 240
           | || |||||||||||||||||||||||||||||||||||||||||||||||  || |||
Sbjct: 381 cagtataggttgacagcttcctttgtcacttagtgatttgaaatgcaagatcaagcctta 440

                                                                       
Query: 241 ctaatcttgatattgctgtcttagaacagttccacagtcttcactttctttgcagattag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaatcttgatattgctgtcttagaacagttccacagtcttcactttctttgcagattag 500

                                                                       
Query: 301 tggttatcatgaagatgtgttcctgcaggagcttttgcccacgccccattcctcaggaca 360
           |||||||||||||||||||||||||||||||||||||   | | || |||||||||||||
Sbjct: 501 tggttatcatgaagatgtgttcctgcaggagcttttgttgatgtcctattcctcaggaca 560

                                                                       
Query: 361 gtggactgactgtaatagtactcttaatgatgttattagtttaaaactcatataagtaaa 420
           |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 561 gtggactgactgtaatagtactcttaatgatgctattagtttaagactcatataagtaaa 620

                                                                       
Query: 421 tttgcaatgttaagatgggccctaaaccaatctaactagtgtccttataaaaaaaaaaga 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||
Sbjct: 621 tttgcaatgttaagatgggccctaaaccaatataactagtgtccttatttaaaaaaaaga 680

                                                                       
Query: 481 tggggacagatatagaacaggaatgaacatacacataggaaggcacaggtgagaacacag 540
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 681 tggggacagatatagaacaggaatgaacatacacataggaatgcacaggtgagaacacag 740

                     
Query: 541 caaaagcaca 550
           ||||||||||
Sbjct: 741 caaaagcaca 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)