BAC Information

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BAC

Clone NameMSMg01-501A02
Chromosome9 (Build37)
Map Location 52,779,808 - 52,958,697
singlet/doubletdoublet
Overlap geneDdx10
Upstream geneEG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876, AI593442, Gm1715
Downstream geneExph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501A02.T7 (MSMg01no501_a02.b1)MSMg01-501A02.TJ (MSMg01no501_a02.g1)
ACCAG576707AG576708
length681703
length of high quality
(start - end)
659 (23 - 681)643 (61 - 703)
definitionCHROMAT_FILE: MSMg01no501_a02.b1 PHD_FILE: MSMg01no501_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:45 2005CHROMAT_FILE: MSMg01no501_a02.g1 PHD_FILE: MSMg01no501_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,958,045 - 52,958,697)(52,779,808 - 52,780,450)
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATTATCAGAATATCCAT
TAAGGCTTTTTTTTTTTTTAAACTTGAAGAAAGCCATGCATGATAACGCA
GGGCACAGATAGAAAAGTACCCACCAGACAGCGCTTCTCACTTTCATATT
GACAGTGGATTTAGTGTAATAATGACACATGATAGAAGTATCTCCATACT
ACGTGGGAGGAAAACTGCATTTTTACATGGACTTAGTCATTTACCCAAAT
TAAAAACTGTAAGTTATTACCTACAGATTTTTGGTTGAGAATAGACTTTT
TAGTGTTTGGAGAAGATTGGTTGCTTTTGTAAGCTTAAAATGACATTCTC
TTTTACTTTAGTGAATCATTTTGTCTTGAACTTTAATACTGTATGTTCCC
CCACCCCCATTTTTTAAAAACCTATTTTGTGATCAGTGGAAAACTAGTGG
TGAAATTATAAAGCAATTTAATAAAATGTTTCATAGAATGACCCTTTATT
GTTTTTGAATAAATATTATTCCTAAGAACCAAAGGTGAGAATTTTGTCTT
TAATATTTTGTAATTTCTGTTCAGACTGAGGACAAGGGAAACAATCATGA
TTGTATTTTTCCTTCTTTTTTATTCTAGTAGATGAAATTGTGTACTAGTT
GTGTATCAGATATTGTACTTATAATCTATAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXAGTAAGTTCCAAATATTTTTAAATGACATATCCAAAAGAA
TATGACTTTTTTATTAGTAGAGGTAAGAATCTGTAACCATTGCTTTTAAC
ATCACCTAGAATATTGTTCCCAAATTTTGTCCAGCAAAATATTGCTGCCA
TGAAATCGTTCATGAATCTCAAGTTCTGTGGTCAAATTTATTAGGAAAAT
GCTGTTTAATAAAACACCCCAGAGATACACAGTGCATAATCAGGACCAAG
TATCTAAGTCAGAATCCCATCAATCTCACACAACGAAATTTCATCTTGAA
AAGATCACTCTTGCTGGGAGTGAAGAATGGAAGAGAGCATGCAGGACAAT
GGCAAGGACATGAATTAGGACCACTGTGGCCATCTAGGGAAAGATGATGG
CTGCCTAACAAAGGTGGTATAAAATGGAAATGGTCAACTTCTGGAGAGAA
TGGGGAAGGTGACAAGGGACATGTCAGAGTCAGTGATGTACCCCAGGTAC
CTGGCCTAGACAATGAGTTCAGAGGCAATACTCTCAGAAGAAATGGATTA
CAAGAGCAAAAGTGGGTTAGGCAAAGAGGAGTTGTGCTTACACTAATGTT
TCTTTGCAATTGAGAAAGCCCATTTCAGCTGGCCAGCATAAGAACTGGGT
GTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_a02.b1 MSMg01no501_a02.b1 CHROMAT_FILE:
MSMg01no501_a02.b1 PHD_FILE: MSMg01no501_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:45 2005
         (659 letters)



>mm_chr9_52957841_52958897
          Length = 1057

 Score = 1185 bits (613), Expect = 0.0
 Identities = 645/657 (98%), Gaps = 6/657 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccattatcagaatatccattaaggctttttttttttttaaacttgaagaaagcca 64
           ||||||||||||||||||||||||||| ||   |||||||||||||||||||||||||||
Sbjct: 857 gaattccattatcagaatatccattaaagc---ttttttttttaaacttgaagaaagcca 801

                                                                       
Query: 65  tgcatgataacgcagggcacagatagaaaagtacccaccagacagcgct-tctcactttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 800 tgcatgataacgcagggcacagatagaaaagtacccaccagacagcg-tgtctcactttc 742

                                                                       
Query: 124 atattgacagtggatttagtgtaataatgacacatgatagaagtatctccatactacgtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atattgacagtggatttagtgtaataatgacacatgatagaagtatctccatactacgtg 682

                                                                       
Query: 184 ggaggaaaactgcatttttacatggacttagtcatttacccaaattaaaaactgtaagtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaggaaaactgcatttttacatggacttagtcatttacccaaattaaaaactgtaagtt 622

                                                                       
Query: 244 attacctacagatttttggttgagaatagactttttagtgtttggagaagattggttgct 303
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 621 attacctacagatttttggttgagaatagactttttagtgtttgtagaagattggctgct 562

                                                                       
Query: 304 tttgtaagcttaaaatgacattctcttttactttagtgaatcattttgtcttgaacttta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgtaagcttaaaatgacattctcttttactttagtgaatcattttgtcttgaacttta 502

                                                                       
Query: 364 atactgtatgttcccccacccccattttttaaaaacctattttgtgatcagtggaaaact 423
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atactgtatgtccccccacccccattttttaaaaacctattttgtgatcagtggaaaact 442

                                                                       
Query: 424 agtggtgaaattataaagcaatttaataaaatgtttcat-agaatgaccctttattgttt 482
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 agtggtgaaattataaagcaatttaataaaatgtttcataagaatgaccctttattgttt 382

                                                                       
Query: 483 ttgaataaatattattcctaagaaccaaaggtgagaattttgtctttaatattttgtaat 542
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgaataaatatttttcctaagaaccaaaggtgagaattttgtctttaatattttgtaat 322

                                                                       
Query: 543 ttctgttcagactgaggacaagggaaacaatcatgattgtatttttccttcttttttatt 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctgttcagactgaggacaagggaaacaatcatgattgtatttttccttcttttttatt 262

                                                                    
Query: 603 ctagtagatgaaattgtgtactagttgtgtatcagatattgtacttataatctatat 659
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagtagatgacattgtgtactagttgtgtatcagatattgtacttataatctatat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1057
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1047
Effective search space:   679503
Effective search space used:   679503
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no501_a02.g1 MSMg01no501_a02.g1 CHROMAT_FILE:
MSMg01no501_a02.g1 PHD_FILE: MSMg01no501_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:45 2005
         (643 letters)



>mm_chr9_52779608_52780650
          Length = 1043

 Score = 1236 bits (639), Expect = 0.0
 Identities = 642/643 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaagttccaaatatttttaaatgacatatccaaaagaatatgacttttttattagtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaagttccaaatatttttaaatgacatatccaaaagaatatgacttttttattagtag 260

                                                                       
Query: 61  aggtaagaatctgtaaccattgcttttaacatcacctagaatattgttcccaaattttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtaagaatctgtaaccattgcttttaacatcacctagaatattgttcccaaattttgt 320

                                                                       
Query: 121 ccagcaaaatattgctgccatgaaatcgttcatgaatctcaagttctgtggtcaaattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagcaaaatattgctgccatgaaatcgttcatgaatctcaagttctgtggtcaaattta 380

                                                                       
Query: 181 ttaggaaaatgctgtttaataaaacaccccagagatacacagtgcataatcaggaccaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaggaaaatgctgtttaataaaacaccccagagatacacagtgcataatcaggaccaag 440

                                                                       
Query: 241 tatctaagtcagaatcccatcaatctcacacaacgaaatttcatcttgaaaagatcactc 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 tatctaagtcagaatcccatcaatcttacacaacgaaatttcatcttgaaaagatcactc 500

                                                                       
Query: 301 ttgctgggagtgaagaatggaagagagcatgcaggacaatggcaaggacatgaattagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgctgggagtgaagaatggaagagagcatgcaggacaatggcaaggacatgaattagga 560

                                                                       
Query: 361 ccactgtggccatctagggaaagatgatggctgcctaacaaaggtggtataaaatggaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccactgtggccatctagggaaagatgatggctgcctaacaaaggtggtataaaatggaaa 620

                                                                       
Query: 421 tggtcaacttctggagagaatggggaaggtgacaagggacatgtcagagtcagtgatgta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggtcaacttctggagagaatggggaaggtgacaagggacatgtcagagtcagtgatgta 680

                                                                       
Query: 481 ccccaggtacctggcctagacaatgagttcagaggcaatactctcagaagaaatggatta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccccaggtacctggcctagacaatgagttcagaggcaatactctcagaagaaatggatta 740

                                                                       
Query: 541 caagagcaaaagtgggttaggcaaagaggagttgtgcttacactaatgtttctttgcaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caagagcaaaagtgggttaggcaaagaggagttgtgcttacactaatgtttctttgcaat 800

                                                      
Query: 601 tgagaaagcccatttcagctggccagcataagaactgggtgtg 643
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgagaaagcccatttcagctggccagcataagaactgggtgtg 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)