BAC Information

Click to search

BAC

Clone NameMSMg01-501B22
Chromosome9 (Build37)
Map Location 101,880,307 - 101,880,870
singlet/doubletsinglet
Overlap geneEphb1
Upstream genePccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099, 9630041A04Rik
Downstream geneKy, LOC664843, Cep63, Anapc13, Amotl2, EG434510, Ryk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501B22.T7 (MSMg01no501_b22.b1)MSMg01-501B22.TJ (MSMg01no501_b22.g1)
ACCAG576795AG576796
length704696
length of high quality
(start - end)
594 (36 - 629)564 (59 - 622)
definitionCHROMAT_FILE: MSMg01no501_b22.b1 PHD_FILE: MSMg01no501_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:54 2005CHROMAT_FILE: MSMg01no501_b22.g1 PHD_FILE: MSMg01no501_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGAT
CTTTCCCAAAATTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTC
TCAGCATCTAATGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTAT
ATAATGGATTACGTTGATGGATTTCCGTATATTAAATCATCCCTGCATCC
CTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCT
TGGATTCGGTTAGCGAGAATTTTATTGAAGATTTTTGCATCGATATTCAT
AAGGGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTT
TAGGTATCAGAGTAATTGTGCCTTCATAGAATGAGTTGGGTAGAGTACCT
TCTACTTCTATTTTGTGGAATTGTTTGTGCAGAACTGGAATTAGATCTTC
TTTGATGGTCTGATAGAACTCTGCACTAAACCCATCTGGTCCTGGCCTTT
TTTTTTGGCTGGGAGACTATTAATGACTGCTTCTATTTCTTTAGGGGATA
TGGGACTGTTTAGATGGTCAACTTGATCCTGATTCAACTTTGGTACCTGG
TATCTGTCCAGNAATTTGTCCATTTCGTCCAGGTTTTCCAGTTTTGTTGA
GAATAGCCTTTTTGAAAAGATCTGATGGGATTTTGATTTTTCTTCAGGAC
CTGT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCTGTAGAGAAAGGTTCCCTGCTAACTTGACACTTTCAGCATC
AATGAGCATGACGATGGGATGGGCAACATCGGGGATGTAGGAAGGCTTCT
GGTAGAGGAGCCCAAGAAAATGTCTCCAGGAACTACAATTAAGGTGTGCA
GCACACTCTGAGCATGCACAGTGTGCCTGGCGCTACCCTGTGCACTTCAC
AGGTGCTGTGCATTTAATCCTTGTACTAGCTCATGTGTCAGAGATGATGT
TTGCGTGTGTATGGGCTTTCCAGACTGGCGAGGAAATCAACATGCAGAGG
ATGGCTTGTTGTGGGCTATGCTGCCCTTGAGTTAATGATGCAGCTACAAT
TTAAACTCAGATGTAGCTGATCCAGAGCTGGTAAATGAAACCCCTGCACC
CGCTGCTGCCACCACTTTCACTTCGGTGGAGAAAAGCAGCTAAATACAGT
CATTGCTTCTGATGGTAAACTCTGCCTAGCAGTTGGAGTATGCAGGCCCT
TTCTGCTGGGATTTATAATACTGCCTTCCAATTCATTATCCCTAANGGTA
GTGCTATGAAGACTGTCTGATGATCCCTGGAAAAAGCATGTCCTTCATAG
GACACACACATCCCATCTCTGTTCTCATTCTACGTATGCCCTAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_b22.g1 MSMg01no501_b22.g1 CHROMAT_FILE:
MSMg01no501_b22.g1 PHD_FILE: MSMg01no501_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:54 2005
         (564 letters)



>mm_chr9_101880107_101881070
          Length = 964

 Score = 1023 bits (529), Expect = 0.0
 Identities = 555/564 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtagagaaaggttccctgctaacttgacactttcagcatcaatgagcatgacgatggg 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 764 ctgtagagaaaggttccctgctaacctgacactttcagcatcaatgagcatgacgatggg 705

                                                                       
Query: 61  atgggcaacatcggggatgtaggaaggcttctggtagaggagcccaagaaaatgtctcca 120
           ||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 704 atgggcaacattggggatgtaggaaggcttctggtataggagcccaaggaaatgtctcca 645

                                                                       
Query: 121 ggaactacaattaaggtgtgcagcacactctgagcatgcacagtgtgcctggcgctaccc 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ggaactacaattaaagtgtgcagcacactctgagcatgcacagtgtgcctggcgctaccc 585

                                                                       
Query: 181 tgtgcacttcacaggtgctgtgcatttaatccttgtactagctcatgtgtcagagatgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tgtgcacttcacaggtgctgtgcatttaatccttgtactagctcatgtgtcagagatgat 525

                                                                       
Query: 241 gtttgcgtgtgtatgggctttccagactggcgaggaaatcaacatgcagaggatggcttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gtttgcgtgtgtatgggctttccagactggcgaggaaatcaacatgcagaggatggcttg 465

                                                                       
Query: 301 ttgtgggctatgctgcccttgagttaatgatgcagctacaatttaaactcagatgtagct 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ttgtgggctgtgctgcccttgagttaatgatgcagctacaatttaaactcagatgtagct 405

                                                                       
Query: 361 gatccagagctggtaaatgaaacccctgcacccgctgctgccaccactttcacttcggtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gatccagagctggtaaatgaaacccctgcacccgctgctgccaccactttcacttcggtg 345

                                                                       
Query: 421 gagaaaagcagctaaatacagtcattgcttctgatggtaaactctgcctagcagttggag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 344 gagaaaagcagctaaatacagtcattgcttctgatggtaaactctgcctagcagttggaa 285

                                                                       
Query: 481 tatgcaggccctttctgctgggatttataatactgccttccaattcattatccctaangg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 284 tatgcaggccctttctgctgggatttataatactgccttccaattcattatcccttaggg 225

                                   
Query: 541 tagtgctatgaagactgtctgatg 564
           ||||||||||||||||||||||||
Sbjct: 224 tagtgctatgaagactgtctgatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)