Query= MSMg01no501_c13.b1 MSMg01no501_c13.b1 CHROMAT_FILE:
MSMg01no501_c13.b1 PHD_FILE: MSMg01no501_c13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:57 2005
(615 letters)
>mm_chr9_85920028_85921042
Length = 1015
Score = 1116 bits (577), Expect = 0.0
Identities = 607/619 (98%), Gaps = 4/619 (0%)
Strand = Plus / Minus
Query: 1 acgttgttttttgtcagagtattgtatcacagcaacagaaaaagaaatgaaggcattaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 acgttgttttttgtcagagtattgtatcacagcaacagaaaaagaaatgaaggcattaag 856
Query: 61 ctattctgcaaaaca----aaacaaacaaacaaacaaacaccagggttctgcaatacctg 116
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 ctcttctgcaaaacaaaacaaacaaacaaacaaacaaacaccagggttctgcaatacctg 796
Query: 117 gtagagcccacctttgtatgtctcaattcatgagctgctaataaaaatgtatttgatttc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 gtagagcccacctttgtatgtctcaattcatgagctgctaataaaaatgtatttgatttc 736
Query: 177 taaatatgtttctttggaattttatcatttgctagctcctattctagataaaaccaaaca 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 taaatatgtttctttggaattttatcatttgctagctcctattctagataaaaccaaaca 676
Query: 237 actggacagggttctattaggcacagtagaaggatggtgcacctctcctttacctttgga 296
||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 actggacaggggcccaagaggcacagtagaaggatggtgcacctctcctttacctttgga 616
Query: 297 atattggcaagggagtttgtacggttttgttatttctgaccatagatttactggtaagcc 356
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 615 atattggcaagggagtttgtacggttttgttatttctgaccatagatttaccggtaagcc 556
Query: 357 attgaagtcagtgggtcattttgacagggtcacatttaccttgttgtccagtgttcttta 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 attgaagtcagtgggtcattttgacagggtcacatttaccttgttgtccagtgttcttta 496
Query: 417 ctatgtagttctctttcagcgttcaggtactaagaatgcatttactaaagcatattttgg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctatgtagttctctttcagcgttcaggtactaagaatgcatttactaaagcatattttgg 436
Query: 477 aaatgagatttaatttcttctgagttttcttttctcccagccttgccctcctgtaatctc 536
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 435 aaatgagatttaatttcttctgagttttcttttctcctagccttgccctcctgtaatctc 376
Query: 537 tttctcccagtgagctcacctactctgccccattgttagttagaggggagttaaattatt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tttctcccagtgagctcacctactctgccccattgttagttagaggggagttaaattatt 316
Query: 597 tcacagcagtaggacctca 615
|||||||||||||||||||
Sbjct: 315 tcacagcagtaggacctca 297
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_c13.g1 MSMg01no501_c13.g1 CHROMAT_FILE:
MSMg01no501_c13.g1 PHD_FILE: MSMg01no501_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:57 2005
(627 letters)
>mm_chr9_85827362_85828387
Length = 1026
Score = 1081 bits (559), Expect = 0.0
Identities = 610/633 (96%), Gaps = 14/633 (2%)
Strand = Plus / Plus
Query: 1 gggatttagggacagacacagagaaatcaaaatgacagctaaagtggagatgggattgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggatttagggacagacacagagaaatcaaaatgacagctaaagtggagatgggattgct 260
Query: 61 agaactagaaactaaaaggtcccaagcaaccccagtgtcccctaacatgacgcagaaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaactagaaactaaaaggtcccaagcaaccccagtgtcccctaacatgacgcagaaaga 320
Query: 121 agtactcctcctgggagctgtcagtggggaatggtgtgcctaccccaactttagatttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtactcctcctgggagctgtcagtggggaatggtgtgcctaccccaactttagatttct 380
Query: 181 aactcagaactgaatgaaagagaataagtttctgttattttaagtggtgttttgttatgc 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 aactcagaactgaatgaaagagaataagtttctgttgttttaagtggtgttttgttatgc 440
Query: 241 taaccacttttta-----tgaatacatatgtcaagttcaggagtcatcacctcttcattt 295
||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 taaccac-----aagaaatgaatatatatgtcaagttcaggagtcatcacctcttcattt 495
Query: 296 cttccccagtcacaacaaataccatgttggactcttgctccacaccaccacactgcgtcc 355
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 496 cttccccagtcacaacaaataccatgttggactcttgctccgcaccaccacactatgtcc 555
Query: 356 catcaccatagttaccattttaccaccacagcaaaatgatgttattctataaatgtgtgc 415
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 catcaccatagttaccatcttaccaccacagcaaaatgatgttattctataaatgtgtgc 615
Query: 416 cttactttctcagattctgagggtccagaagtcagccctgtgtgtgtgtgtgtgagtgtg 475
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 616 ctt-ctttctcagattctgagggttcagaagtcagccctgtgtgtgtgtgtgtg--tgtg 672
Query: 476 tgtgtgtgtgtccattgtctagcatacagcagaaaattcaataagtgcttcagaaaataa 535
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 673 agtgtgtgtgtccattgtctagcctacagcagaaaattcaataagtgcttcagaaaataa 732
Query: 536 gataatgacaatttctagctgtattgaa-tctaccatgttcctgtgtaaaaatgttccca 594
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 733 gataatgacaatttctagctgtattgaaatctaccatgttcctgtgtaaaaatgttccca 792
Query: 595 tcttgaggattcaacacgtgcagttatgggacc 627
|||||||||||||||||||||||||||||||||
Sbjct: 793 tcttgaggattcaacacgtgcagttatgggacc 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1026
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1016
Effective search space: 626872
Effective search space used: 626872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
