BAC Information

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BAC

Clone NameMSMg01-501G15
Chromosome9 (Build37)
Map Location 77,913,412 - 77,913,936
singlet/doubletsinglet
Overlap geneGcm1
Upstream geneLOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212, Elovl5
Downstream geneLOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501G15.T7 (MSMg01no501_g15.b1)MSMg01-501G15.TJ (MSMg01no501_g15.g1)
ACCAG577015AG577016
length711702
length of high quality
(start - end)		674 (38 - 711)503 (57 - 559)
definitionCHROMAT_FILE: MSMg01no501_g15.b1 PHD_FILE: MSMg01no501_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:15 2005CHROMAT_FILE: MSMg01no501_g15.g1 PHD_FILE: MSMg01no501_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:15 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCAAGG
CCCTTCCCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACA
TCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACT
AGACAAGGCTGCCCTCTTTCTCCCTACCTTTTCAACATAGTACTTGAAGT
ATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTG
GAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATAT
ATAAGTGACCCTATTTATTCTACCAGAGAACTCCTAAACCTGATAAACAG
CTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCT
TTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACA
CCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGACTCTAAC
TAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAAAG
AAATTAAGGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATT
GGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAG
ATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTGG
AAGGAGCAATT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCTCATAGATAAACATGACATGGAGAGAGAACAATGAATAGAACA
GCATCTTAGCCCTTGTGGAAGGAGAAGTCACTTAGGAGAAGAAGGAGAGG
TGGGTCCCACTCTCTTCCTATGTCCGTTTGTTTTCTGTTCTTTATAAATA
GGATGAGGTTGCACCTCTTGTTTTTACAAGTCACAGATCTAGAAAACCCA
TCTTAAAAAAAAAAAACTAAACAAAATTTTAAACACTTCTTTGGTAAAGT
ATTTATTTTCACACGTTCACAGCTCTTCTGTCTTCTTTCTGTTCCTTCAT
TTTCAGCTCCCAAAAGGCATAGATGAAATGCTAAGTTTACATGCATAAGC
CACAATAAGGCCCCTCCAGACTGCCCTGCTGAGGGGTCAAATCAGAGGAA
TCTTGGTCAGAGGCATCAGAGAACATTTTGCCCCAAAACCAAGTGCTTTT
TAAAAAACAAACAAACAAACAAACTTTTTTCCTTTCTTTCCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTNCTCCTNNTNCTNCANNTNCTNNNANTTTT
TNTTNTTTTTATTCCTTTTTTTATTTTTCCACCCCCCTCCTTCTTCTTTT
TTTTTTTTTTTTATATATACAATTTTTTTTCTTATTCCTACATATTTTCC
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_g15.g1 MSMg01no501_g15.g1 CHROMAT_FILE:
MSMg01no501_g15.g1 PHD_FILE: MSMg01no501_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:15 2005
         (503 letters)



>mm_chr9_77913073_77913975
          Length = 903

 Score =  762 bits (394), Expect = 0.0
 Identities = 485/526 (92%), Gaps = 24/526 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcatagataaacatgacatggagagagaacaatgaatagaacagcatcttagcccttgt 60
           ||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 864 ctcatagatgagcatgacatggagagataacaatgaatagaacagcatcttagcccttgt 805

                                                                       
Query: 61  ggaaggagaagtcacttaggagaagaaggagaggtgggtcccactctcttcctatgtccg 120
           |||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||
Sbjct: 804 ggaaggagaagtcacttaggagaaaaaggagaggtggatcccactcttttcctatgtccg 745

                                                                       
Query: 121 tttgttttctgttctttataaataggatgaggttgca-cctcttgttttt-acaagtcac 178
           ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct: 744 tttgttttctgttctttataaataggatgaggttg-agcctcttgtttttaacaagtcac 686

                                                                       
Query: 179 agatctagaaaacccatcttaaaaaaa----------aaaaactaaacaaaattttaaac 228
           | |||||||||||||||||||||||||          |||||||||||||||||||||||
Sbjct: 685 aaatctagaaaacccatcttaaaaaaacaaaaaaaccaaaaactaaacaaaattttaaac 626

                                                                       
Query: 229 acttctttggtaaagtatttattttcacacgttcacagctcttctgtcttctttctgttc 288
           ||||||||||||||||||| |  ||||||||| ||||||||||| |||||||||||||||
Sbjct: 625 acttctttggtaaagtattcaacttcacacgtccacagctcttcagtcttctttctgttc 566

                                                                       
Query: 289 cttcattttcagctcccaaaaggcatagatgaaatgctaagtttacatgcataagccaca 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttcattttcagctcccaaaaggcatagatgaaatgctaagtttacatgcataagccaca 506

                                                                       
Query: 349 ataaggcccctccagactgccctgctgaggggtcaaatcagaggaatcttggtcagaggc 408
           ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 505 ataaggccccttcagaccgccctgctgaggggtcagatcagaggaatcttggtcagaggc 446

                                                                       
Query: 409 atcagagaacattttgccccaaaaccaagtgctttttaaa----aaacaaacaaacaaac 464
           ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||
Sbjct: 445 atcagagaacattttgccccaaaaccaagtgctttttaaaaaacaaacaaacaaacaaac 386

                                                         
Query: 465 aaacttttttccttt--ctttc--cctcctc---ctcctcctcctc 503
           |||||||||||||||  |||||   ||| ||   ||||||||||||
Sbjct: 385 aaacttttttccttttcctttctttctcttctttctcctcctcctc 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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