Query= MSMg01no501_k22.b1 MSMg01no501_k22.b1 CHROMAT_FILE:
MSMg01no501_k22.b1 PHD_FILE: MSMg01no501_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:33 2005
(613 letters)
>mm_chr9_40028311_40029323
Length = 1013
Score = 1125 bits (582), Expect = 0.0
Identities = 602/612 (98%), Gaps = 7/612 (1%)
Strand = Plus / Minus
Query: 6 gaattcacttat----aatttccattgcatcaaaaagaaatactaataaaactttgcaaa 61
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 832 gaattcacttataaacaat---cattgcatcaaaaagaaatactaataaaactttgcaaa 776
Query: 62 cactactgcagcaaaatgtaaataccacttatgagaattagtagtccactctgaagacag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 cactactgcagcaaaatgtaaataccacttatgagaattagtagtccactctgaagacag 716
Query: 122 tgctgaggggcattagagagtagaaaaaaagcttcaaaatttaatgagccaaaatgttga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tgctgaggggcattagagagtagaaaaaaagcttcaaaatttaatgagccaaaatgttga 656
Query: 182 ctcaataaattttaaaaaagcaataaactaaatatagaaagtaatgacaaaaaagaaagc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ctcaataaattttaaaaaagcaataaactaaatatagaaagtaatgacaaaaaagaaagc 596
Query: 242 atgttaataaaccaaagtagttggttctttgaaaggattactaaactatgtcaatactga 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 atgttaataaaccaaagtagttggttctttgaaaggattactaaactatgtcaatactga 536
Query: 302 tcacaccatgaaactcaatgagcattgagccttagaacaggtaaatattttgacaattac 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tcacaccatgaaactcaatgagcattgagccttagaacaggtaaatattttgacaattac 476
Query: 362 atcagggttggttgtatgaagcaaaaaatcatgccttatgaaaatacatggcagcagtta 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 atcagggttggttgtatgaagcaaaaaatcatgccttatgaaaatacatggcagcagtta 416
Query: 422 cacttgggatggagaaaacggatggagttgaaatgcttgcagcttaggcattactgaaga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cacttgggatggagaaaacggatggagttgaaatgcttgcagcttaggcattactgaaga 356
Query: 482 agtggtgatggtttggagactaggaatcagaggtatatactgggatgtctagggtaacca 541
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 355 agtggtgacggtttggagactaggaatcagaggtatatactgggatgtcaagggtaacca 296
Query: 542 ctaaaatggtatcttaaaaatacagttgacaagtcaataaaggggaaataacgaagtagt 601
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ctaaaatggtgtcttaaaaatacagttgacaagtcaataaaggggaaataacgaagtagt 236
Query: 602 aaaattattaat 613
||||||||||||
Sbjct: 235 aaaattattaat 224
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_k22.g1 MSMg01no501_k22.g1 CHROMAT_FILE:
MSMg01no501_k22.g1 PHD_FILE: MSMg01no501_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:33 2005
(579 letters)
>mm_chr9_39863519_39864497
Length = 979
Score = 1104 bits (571), Expect = 0.0
Identities = 577/579 (99%)
Strand = Plus / Plus
Query: 1 ttggagtctccttgctccttggaaggtagggtacgatttggaggagatggttactgaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggagtctccttgctccttggaaggtagggtacgatttggaggagatggttactgaatg 260
Query: 61 gttttgaggatagaagaacggtatctggacaagattaattgacagcgtgtgagcacaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttttgaggatagaagaacggtatctggacaagattaattgacagcgtgtgagcacaata 320
Query: 121 caatatcataatagtctcattgatttgtgcaatgagaaatagaagaaggcgtgaacaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatatcataatagtctcattgatttgtgcaatgagaaatagaagaaggcgtgaacaaca 380
Query: 181 agatcctgaggtccagccccctggtataattgactttcagtatttccacttccaggtctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatcctgaggtccagccccctggtataattgactttcagtatttccacttccaggtctg 440
Query: 241 atgctcctctcctattaagtggagagcaggtgagcgtgtgttcagtcaggacaggtgaga 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgctcctctcctattaagtggacagcaggtgagcgtgtgttcagtcaggacaggtgaga 500
Query: 301 tagctctcacttgataaggaaactctgagtaaagacgggaagtcatatttttggagcaat 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 tagctctcacttgataaggaaactctgagtaaagatgggaagtcatatttttggagcaat 560
Query: 361 ctaacacgctctgtgcaattctaaaatagatgacacactcccagagttcaggtgggtcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaacacgctctgtgcaattctaaaatagatgacacactcccagagttcaggtgggtcca 620
Query: 421 gactcaaaagaccaagacgtagctctgccacgaatccagctcgagatcagcctggacaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gactcaaaagaccaagacgtagctctgccacgaatccagctcgagatcagcctggacaat 680
Query: 481 ttagcaagactgtctcaaaatcaaaaacaaaacaaaaatgactggaggtacaattcacgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttagcaagactgtctcaaaatcaaaaacaaaacaaaaatgactggaggtacaattcacgg 740
Query: 541 acagaatgctctcctggctagcacactaggctctcagtt 579
|||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acagaatgctctcctggctagcacactaggctctcagtt 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
