BAC Information

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BAC

Clone NameMSMg01-501O15
Chromosome9 (Build37)
Map Location 105,350,098 - 105,400,714
singlet/doubletdoublet
Overlap geneAtp2c1
Upstream geneCpne4, Mrpl3, Nudt16, 1700080E11Rik, Nek11, Aste1
Downstream geneEG434434, LOC664981, Pik3r4, E330026B02Rik, EG665033, 1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501O15.T7 (MSMg01no501_o15.b1)MSMg01-501O15.TJ (MSMg01no501_o15.g1)
ACCAG577395AG577396
length691575
length of high quality
(start - end)
517 (59 - 575)557 (19 - 575)
definitionCHROMAT_FILE: MSMg01no501_o15.b1 PHD_FILE: MSMg01no501_o15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:49 2005CHROMAT_FILE: MSMg01no501_o15.g1 PHD_FILE: MSMg01no501_o15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,350,098 - 105,350,614)(105,400,163 - 105,400,714)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCATAAAT
TTTCCACCATATTATGCTGTGGCTCCATTGGACCCACAATTTTTATTCTA
CTTTTTTTTTTTTTTGTAATGTTGGCATAAAAAGGAGTGGGGGAATACTG
GAGAATTAAAGTTGGCCTTACCATATGCTAACAGTAACCCAAACACATTC
CCCAACTTTATTCCACAGGTCATATTCGGTGCCCCCCCACACACACACAC
ACACCAAAACACACTTTTTAAAACAAAGAGTTTCGGCTCATGATCTAGCT
CCTTCACTGTGTTTTAAATACCTTCAAGAGAAGGCATCTCTTTTCTTCCT
ATATATTTCTTACAATCATAAACACTGATTTTCTTTTTTGTTTGTTTTGT
CTTAATATTTGAACTTCCCATCCTGGTCTCCTGCAGAGATGCTGCTCAGT
CTCTTTTCCTTGCATTGCCGAGGTGAGTTCTGTCCTTCCTTACATGCCCA
CACATCATCTCCTTTTTTCTCCTTTTTCTCCTGTTCACAAATATCCTCAA
CATGATATTTCCTGAAATTATTCTTGTTACTTTTGCTTCATTATCTTTCT
GAGGTTTTTTTCTTTCGGTTTTTCTGTTTTCTCAAACTTCATAGTCAATT
TTTTGTTTCAACAGTGAGGGCCGACCGTTCACTCTACAAAT
GTTTCCCAAAATGGGATCTTCAACTGAGCATGGTGGCATGTGTCTGTAAT
TCCATCTCTGGGGAGGCAGAGATGGGAGGATCCCTAGGGCTTGCTGCCCA
GTCAATCTAGACTATCTGTGTGCCCCAGGCCAATTATAGACCTGGCTCAA
AGGAGATGAAGGGTATTCTAAAGATGTACTCAAGGCTGTCTTCTATGCTT
ACACACACACACATACACACACACACACACGCTCACGAACATACATACAT
ATGCATAAACGGGTTCATTTTTTTTTTTCTTTTAAACCAACTATATGGGA
TGGTGAACTTCAGGGCATATATCTTTGTTTGCTGACTTTTCCTAACAATT
TTGATCCTTTAGTTCAGATGATGCTAAAGGGTTAAAAGAAGACAGTAACT
AGGGGAAGATTTAAAAGTAGCTCTTCTAGTTTTATTTTAAAATACACACT
CCTTTATCATCTGTATTTAAATAGTTGGACAAGGCTAATTTATATCAAGT
ATTTGATCTTCATATACTTTTAAATGTTCAAGTTTTATTATAATATAAAA
GCAGGGTAGCTCATATCCTCTTAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_o15.b1 MSMg01no501_o15.b1 CHROMAT_FILE:
MSMg01no501_o15.b1 PHD_FILE: MSMg01no501_o15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:49 2005
         (517 letters)



>mm_chr9_105349898_105350814
          Length = 917

 Score =  977 bits (505), Expect = 0.0
 Identities = 514/517 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattatgctgtggctccattggacccacaatttttattctacttttttttttttttgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atattatgctgtggctccattggacccacaatttttattctacttttttttttttttgta 260

                                                                       
Query: 61  atgttggcataaaaaggagtgggggaatactggagaattaaagttggccttaccatatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgttggcataaaaaggagtgggggaatactggagaattaaagttggccttaccatatgc 320

                                                                       
Query: 121 taacagtaacccaaacacattccccaactttattccacaggtcatattcggtgccccccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacagtaacccaaacacattccccaactttattccacaggtcatattcggtgccccccc 380

                                                                       
Query: 181 acacacacacacacaccaaaacacactttttaaaacaaagagtttcggctcatgatctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacacacacacacaccaaaacacactttttaaaacaaagagtttcggctcatgatctag 440

                                                                       
Query: 241 ctccttcactgtgttttaaataccttcaagagaaggcatctcttttcttcctatatattt 300
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctccttcactgtgtcacaaataccttcaagagaaggcatctcttttcttcctatatattt 500

                                                                       
Query: 301 cttacaatcataaacactgattttcttttttgtttgttttgtcttaatatttgaacttcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttacaatcataaacactgattttcttttttgtttgttttgtcttaatatttgaacttcc 560

                                                                       
Query: 361 catcctggtctcctgcagagatgctgctcagtctcttttccttgcattgccgaggtgagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catcctggtctcctgcagagatgctgctcagtctcttttccttgcattgccgaggtgagt 620

                                                                       
Query: 421 tctgtccttccttacatgcccacacatcatctccttttttctcctttttctcctgttcac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctgtccttccttacatgcccacacatcatctccttttttctcctttttctcctgttcac 680

                                                
Query: 481 aaatatcctcaacatgatatttcctgaaattattctt 517
           |||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaatatcctcaacatgatatttcctgaaattattctt 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no501_o15.g1 MSMg01no501_o15.g1 CHROMAT_FILE:
MSMg01no501_o15.g1 PHD_FILE: MSMg01no501_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:49 2005
         (557 letters)



>mm_chr9_105399758_105400714
          Length = 957

 Score = 1044 bits (540), Expect = 0.0
 Identities = 549/552 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   actgagcatggtggcatgtgtctgtaattccatctctggggaggcagagatgggaggatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 actgagcatggtggcatgtgtctgtaattccatctctggggaggcagagatgggaggatc 898

                                                                       
Query: 65  cctagggcttgctgcccagtcaatctagactatctgtgtgccccaggccaattatagacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 cctagggcttgctgcccagtcaatctagactatctgtgtgccccaggccaattatagacc 838

                                                                       
Query: 125 tggctcaaaggagatgaagggtattctaaagatgtactcaaggctgtcttctatgcttac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 tggctcaaaggagatgaagggtattctaaagatgtactcaaggctgtcttctatgcttac 778

                                                                       
Query: 185 acacacacacatacacacacacacacacgctcacgaacatacatacatatgcataaacgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 777 acacacacacatacacacacacacacacgctcacgaacatacatacatatgcataaacgt 718

                                                                       
Query: 245 gttcatttttttttttcttttaaaccaactatatgggatggtgaacttcagggcatatat 304
           | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gctcagttttttttttcttttaaaccaactatatgggatggtgaacttcagggcatatat 658

                                                                       
Query: 305 ctttgtttgctgacttttcctaacaattttgatcctttagttcagatgatgctaaagggt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ctttgtttgctgacttttcctaacaattttgatcctttagttcagatgatgctaaagggt 598

                                                                       
Query: 365 taaaagaagacagtaactaggggaagatttaaaagtagctcttctagttttattttaaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 taaaagaagacagtaactaggggaagatttaaaagtagctcttctagttttattttaaaa 538

                                                                       
Query: 425 tacacactcctttatcatctgtatttaaatagttggacaaggctaatttatatcaagtat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tacacactcctttatcatctgtatttaaatagttggacaaggctaatttatatcaagtat 478

                                                                       
Query: 485 ttgatcttcatatacttttaaatgttcaagttttattataatataaaagcagggtagctc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ttgatcttcatatacttttaaatgttcaagttttattataatataaaagcagggtagctc 418

                       
Query: 545 atatcctcttag 556
           ||||||||||||
Sbjct: 417 atatcctcttag 406


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)