GAAACACTTTTCAAAAGGATCCGCGGAATTCTCCATGCGAAAAACATTTC
CATCTGCACAATTATTGCTGAAATGATGGGATTGTGTAACTATATATGAT
GAGATGAAAGTTTTTACATCACAAACAAATTATACACTCTCTAATCCTCA
CCATCCTCTTCTCCACCCACCCCATGTTACCTGTCACAAGTGGTATTATC
ATATAGACTTGACCCCAGCATACATGTGAGGTTAGAATTGGCTGTTTGAT
CTTTCTTGCTAATGTCTCATATATAAGCAGCAACTTCCTTGTTCATATTG
CCTCTAACACCATACAAAGCTCTACCCAGTTAAGTCTAATGGAGGGATTA
GGGAGATAGATTAGTTAGTAAACTGTCACACAAGAACCTGAGCTCAGTCC
CCATAACCCCAAAAGTGGGTATGGTGGTACACCTTGCAAATTCAGGGCTG
GGAATATGGAAACAGGTAAATCCCAGGGGCTCAAGGGCCCATAAGCCTAG
CTCAGCCTGCAAACACCAGGCCAGTGAGACCCTTCCTCAAAAATAAACAA
AAAACAAAAAACCAAGGTGGCTAGCACCTGAGAAATGACACCCAGGTTGC
CCTCTGGCCTGTACAAACATGTGTGCACACACATCCGCACACACACACAC
CGCTGCCCAGAGGAGCTTTTTTTGTT

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGGCTGGAGAGATGGCTTAA
TGGGTAAAATGTTTGCCCCATAAGCATGAAGACCTTATTTTGGATCATCA
GAACCCATAAAAATAGTTGGCCATGTTGGCACATGACTGTAATCATGGCT
AGGAGGCAGAGACAGGAGGCTCCTGCAGGTTCACTGGCCAGCCAGTCTAG
CCAATGAGTGAGCTCCAGGTTCAGTGAGAGACCCTCCCCCCAAAAGATGG
ACGGCAATATATGTCTTCCAACAAGTACACACATGGATAAGTACTTATAC
CAGATACACATGTGAGGACACCCCTGCACACAACAACAACAAAATGGTGG
GCTGCCTTAATTAGGGTTTCTATTGCTGTGACCAATATCACCAAAAGCAA
CTTGGAGGTTTTTGTCAGCTTATACATCCTGATCACGCAGATGAGTAGGA
AGTCAGGGCAGGAGCTCAAGGCAGGGACCTGGAAGCAGGAGCTGATGCCG
AGGCAGTGGAAGAGTGCTGCTTACTGGCTTGTTCCTTGTGTGCTAGCTGC
TTTCTTACAGAACCCAGAACCACCAGCCCTCANGAAGGTACCGCTTGCAC
TGCCCTGGGCCCTCAAGGATCCTCCAGGATCAGGAAAATGCACCGCAGGC
TTGCTCACAGGCCCATCAGATAGGGGGCATTTTCT

Query= MSMg01no502_k11.b1 MSMg01no502_k11.b1 CHROMAT_FILE:
MSMg01no502_k11.b1 PHD_FILE: MSMg01no502_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:45 2005
         (605 letters)



>mm_chr9_61661488_61662492
          Length = 1005

 Score = 1052 bits (544), Expect = 0.0
 Identities = 589/604 (97%), Gaps = 2/604 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   tccatctgcacaattattgctgaaatgatgggattgtgtaactatatatgatgagatgaa 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tccatctgcacaattattgctgaaatgatgggattgtgtaactatatatgatgagatgaa 262

                                                                       
Query: 63  agtttttacatcacaaacaaattatacactctctaatcctcaccatcctcttctccaccc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agtttttacatcacaaacaaattatacactctctaatcctcaccatcctcttctccaccc 322

                                                                       
Query: 123 accccatgttacctgtcacaagtggtattatcatatagacttgaccccagcatacatgtg 182
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 323 accccgtgttacctgtcacaagtggtattatcatatagacttgaccccagcatacatgta 382

                                                                       
Query: 183 aggttagaattggctgtttgatctttcttgctaatgtctcatatataagcagcaacttcc 242
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 383 aggttagaattggctgtttaatctttcttgctaatgtctcatatataagcagcaactccc 442

                                                                       
Query: 243 ttgttcatattgcctctaacaccatacaaagctctacccagttaagtctaatggagggat 302
            || |||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
Sbjct: 443 atgctcatattgcctctaacgccatacaaatctctacccagttaagtctaatggaggggt 502

                                                                       
Query: 303 tagg-gagatagattagttagtaaactgtcacacaagaacctgagctcagtccccataac 361
           | || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 503 t-ggagagatagattagttagtaaactgtcacacaagaacctgagctcagtccccagaac 561

                                                                       
Query: 362 cccaaaagtgggtatggtggtacaccttgcaaattcagggctgggaatatggaaacaggt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cccaaaagtgggtatggtggtacaccttgcaaattcagggctgggaatatggaaacaggt 621

                                                                       
Query: 422 aaatcccaggggctcaagggcccataagcctagctcagcctgcaaacaccaggccagtga 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aaatcccaggggctcaagggcccataagcctagctcagcctgcaaacaccaggccagtga 681

                                                                       
Query: 482 gacccttcctcaaaaataaacaaaaaacaaaaaaccaaggtggctagcacctgagaaatg 541
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 682 gacccttcctcaaaaataaacaaaaaacaaaaaaccaaggtgactagcacctgagaaatg 741

                                                                       
Query: 542 acacccaggttgccctctggcctgtacaaacatgtgtgcacacacatccgcacacacaca 601
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 742 acacccaggttgccctctggcctgtacaaacatgtatgcacacacatccgcacgcacaca 801

               
Query: 602 cacc 605
           ||||
Sbjct: 802 cacc 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)