Query= MSMg01no503_g22.b1 MSMg01no503_g22.b1 CHROMAT_FILE:
MSMg01no503_g22.b1 PHD_FILE: MSMg01no503_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:42 2005
(617 letters)
>mm_chr9_42000459_42001475
Length = 1017
Score = 1178 bits (609), Expect = 0.0
Identities = 612/613 (99%)
Strand = Plus / Minus
Query: 5 ggaattcatccgcatctcaaggctgacagaagagcaaattaagtgttatcttctccggag 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 ggaattcatccgcatcacaaggctgacagaagagcaaattaagtgttatcttctccggag 758
Query: 65 tccttgatgaagaacaccctggtcttggcaactcactatgcatttttgacaagcttcatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tccttgatgaagaacaccctggtcttggcaactcactatgcatttttgacaagcttcatg 698
Query: 125 aaagaggaaccattaggggctttctgtaaattgcagttaagtctgaggtatgtatgagag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aaagaggaaccattaggggctttctgtaaattgcagttaagtctgaggtatgtatgagag 638
Query: 185 accatgttcctaagtgtcttcccagggaaagacgtaagcaatgtctaccccttcgcagta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 accatgttcctaagtgtcttcccagggaaagacgtaagcaatgtctaccccttcgcagta 578
Query: 245 aggtcccaactacaaactcaggtagtttggcctacatttacccagaggaacaatggagtt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aggtcccaactacaaactcaggtagtttggcctacatttacccagaggaacaatggagtt 518
Query: 305 tattgagcttccttatagagcatcagtaagaggtttcttacagccgtgtgggtgctcctc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tattgagcttccttatagagcatcagtaagaggtttcttacagccgtgtgggtgctcctc 458
Query: 365 cttcccaactgacaatatctggaaagcctgcacccagcatggtactagccacatagagga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cttcccaactgacaatatctggaaagcctgcacccagcatggtactagccacatagagga 398
Query: 425 gcctctccctagtcttcccctgcctatatactctagtccttccttgaggacacctgcaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gcctctccctagtcttcccctgcctatatactctagtccttccttgaggacacctgcaat 338
Query: 485 taaagcagagttgcttagcaggtgatagggcgtagatggctattcaggagaggggctcgt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 taaagcagagttgcttagcaggtgatagggcgtagatggctattcaggagaggggctcgt 278
Query: 545 gatctaccgcacctcccatgaaggggtctaagcaagttaacagacccagttcggatcatc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gatctaccgcacctcccatgaaggggtctaagcaagttaacagacccagttcggatcatc 218
Query: 605 gtcttgaaagggg 617
|||||||||||||
Sbjct: 217 gtcttgaaagggg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_g22.g1 MSMg01no503_g22.g1 CHROMAT_FILE:
MSMg01no503_g22.g1 PHD_FILE: MSMg01no503_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:42 2005
(356 letters)
>mm_chr9_41801489_41802244
Length = 756
Score = 598 bits (309), Expect = e-175
Identities = 351/380 (92%), Gaps = 24/380 (6%)
Strand = Plus / Plus
Query: 1 ctggagatatttccagattgtaaagcatacaggatgggccagtgaggaagggcgaggcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ctggagatatttccagattgtaaagcatacaggatgggccagtgaggaagggcgaggcta 236
Query: 61 aggactctgttcaatgactggcttttcacagggaaggttctagacatctttacaagagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 aggactctgttcaatgactggcttttcacagggaaggttctagacatctttacaagagtg 296
Query: 121 tctaggatagaggagcaaaattgtttggtacttagaaaacatgaacggctggttccagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tctaggatagaggagcaaaattgtttggtacttagaaaacatgaacggctggttccagtc 356
Query: 181 tctctctctctctctctctctctctctctctctctctctctctctctctctctctctctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tctctctctctctctctctctctctctctctctctctctctctctctctctctctctctc 416
Query: 241 tattttt-----------------------ttc-ggtttccctgtangtaccaagctctc 276
| | | | ||| |||||||||||| |||||||||||||
Sbjct: 417 tctctctctctctctctctctctcgacaggttccggtttccctgtaggtaccaagctctc 476
Query: 277 tcacacaaaacagtcaacttatatagtgaaggcaaagaagcatagcctctgcgcctcttg 336
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tcacacaaaacagtcaacttaaatagtgaaggcaaagaagcatagcctctgcgcctcttg 536
Query: 337 gcacatcctttaagttattt 356
||||||||||||||||||||
Sbjct: 537 gcacatcctttaagttattt 556
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 124
Number of extensions: 48
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space: 259209
Effective search space used: 259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
