BAC Information

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BAC

Clone NameMSMg01-503K10
Chromosome9 (Build37)
Map Location 26,651,875 - 26,708,659
singlet/doubletdoublet
Overlap geneGlb1l3, Gm1110
Upstream geneB3gat1, BC038479
Downstream geneLOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b, Spata19, LOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503K10.T7 (MSMg01no503_k10.b1)MSMg01-503K10.TJ (MSMg01no503_k10.g1)
ACCAG578718AG578719
length715707
length of high quality
(start - end)
242 (86 - 327)140 (91 - 230)
definitionCHROMAT_FILE: MSMg01no503_k10.b1 PHD_FILE: MSMg01no503_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:59 2005CHROMAT_FILE: MSMg01no503_k10.g1 PHD_FILE: MSMg01no503_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,708,418 - 26,708,659)(26,651,875 - 26,652,014)
sequence
CTTTTATTTCTGGTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTT
CGTAAGATCCGCGGATTCAAGTGACTTGCCTGGTCAGCATGTGTTGTTGC
CCACCCAGCTATCTCTTGGAAATAGTATGCCAGTTGCTGGATATTTTTAC
CATCCCATTTCCCAGAATCACCTGCTGTCTCAGTAGAAAACAGTACTGGG
GCTGAAGAGGTGGCTCATTGTTTAAGAGCACCGACTGCTCTTCTAGAGGT
CCTGAGTTCAATTCCCAGCAACCACATAGTGGTTCACAACAATCTGTCAT
GGAAGCTGATGCACTCTTCTGGTGTGTGTCTGATCACAGCTACAGTGTAG
TAAAATACATATATCTTTAAAAAAAGAACAGAAAAGAAAAGAAACGGAAA
AGATAAGATCAGGAAAAGAAAAGAACAGGAAAAGAAAAGAGTACTGAATG
CCAGTTCTTCCTACTTTCTTAAATCTTCAGCTTGTTAAAATTTGGCCCCC
AACCTAAGGCTCTCCCAAATAAGTCCTTTAAGGAAAAAAATTTCGTCCAA
GTTCCCGGTGGGTTGGGTAAAGAAAAAGTGCCGTTGGGGAAATAAAAAAC
CAGCCCCCTCGGGTCCTAAAAAAAAGAAAAAAACCCGGCGTTTCCGTGGC
CTGGAACTCCGGAATATGGGGTAAAACCTATCTTTTTTTCTTTCCCCAAA
GACCCCCCCCCGGGA
TTTTTTCTATCTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATATTGATAG
TTGTCAATGCTGTAGAGAAAGAAGTACTTCTGAAACATTCTGACAAAGAT
CATCAGAAACTTAGGGTGTGGGGGGAGACAGGATGAGTAAAAGTGGTAAC
AAGATGCTATTTGTAACCCATTTTGGAAAGCTACAATAGGACTGTCCCAT
TAACCTATTGCCAAATCATCCATGCAGGAACACTATCTTTTTTATTTAAC
CCCCTTTTGACAAATAGGTGGACCAAGGAAGGGGTTTTTTTTTAAAGGGG
CCTAAAAAATGGAAGGGAAGATTTTTTGGGACCCCCCCTTTTTCAAAGAT
TTTTCCCCCCGGTTGTGTTTTAANTTTTCTTTTGATTTTCTTCCCGCCCC
CCCCCCNNNNNNNNNCGAAAGGNNNNAGTAGAAAGGAGATAATTTATGGC
CTCGCTTTNCTTTNTTCCTCTTTNNNNTTAGTAACACCTCTTTTTTTGAG
CCCNCTTAGGGGGTTNNNNNNNNAAANNNNNNCTGGGGCCTTGAGNNNNN
NNNNNNNNNNNNNNCGCACTAGGTTTTTGGTCNNTTAGAGGAACCCCTTT
GTGGCGGTTTTTTTTTTGCAGGTTGGCTNCCCNNNNNNNNNNNATATCTG
CATTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_k10.b1 MSMg01no503_k10.b1 CHROMAT_FILE:
MSMg01no503_k10.b1 PHD_FILE: MSMg01no503_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:59 2005
         (242 letters)



>mm_chr9_26708348_26708989
          Length = 642

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcatgtgttgttgcccacccagctatctcttggaaatagtatgccagttgctggatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 agcatgtgttgttgcccacccagctatctcttggaaatagtatgccagttgctggatatt 253

                                                                       
Query: 61  tttaccatcccatttcccagaatcacctgctgtctcagtagaaaacagtactggggctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tttaccatcccatttcccagaatcacctgctgtctcagtagaaaacagtactggggctga 193

                                                                       
Query: 121 agaggtggctcattgtttaagagcaccgactgctcttctagaggtcctgagttcaattcc 180
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 agaggtggctcagtggttaagagcaccgactgctcttctagaggtcctgagttcaattcc 133

                                                                       
Query: 181 cagcaaccacatagtggttcacaacaatctgtcatggaagctgatgcactcttctggtgt 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 132 cagcaaccacatagtggttcacaacaatctgtcatgggagctgatgcactcttctggtgt 73

             
Query: 241 gt 242
           ||
Sbjct: 72  gt 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no503_k10.g1 MSMg01no503_k10.g1 CHROMAT_FILE:
MSMg01no503_k10.g1 PHD_FILE: MSMg01no503_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:59 2005
         (140 letters)



>mm_chr9_26651675_26652214
          Length = 540

 Score =  271 bits (140), Expect = 1e-77
 Identities = 140/140 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattgatagttgtcaatgctgtagagaaagaagtacttctgaaacattctgacaaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atattgatagttgtcaatgctgtagagaaagaagtacttctgaaacattctgacaaagat 260

                                                                       
Query: 61  catcagaaacttagggtgtggggggagacaggatgagtaaaagtggtaacaagatgctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcagaaacttagggtgtggggggagacaggatgagtaaaagtggtaacaagatgctat 320

                               
Query: 121 ttgtaacccattttggaaag 140
           ||||||||||||||||||||
Sbjct: 321 ttgtaacccattttggaaag 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 540
Length adjustment: 8
Effective length of query: 132
Effective length of database: 532
Effective search space:    70224
Effective search space used:    70224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)