CTTTTGCATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGAT
CCGCGGAATTCCTGAAAAGGTTCTGGTCTTCAGTCCAGTAGAGGGCAGAA
TGAGGTAGATTCTGATGTCAGTGAAGAACTGCAGCCGTGACAGAGTAGAT
GAACTTGCCACCAGGGTGGCAAGGCAGTGCCAACCTCCTTTTGGCTATCA
GGCTGACACCATAACATGCCATCCACATTTGGGGTGGGTCTTTCCACCTT
GAATAACCTGATCAAGAAGATGCCTTTCAAGGTGTGCCCAGGGGCTTGAT
TCCAGATTCTGTCATGCTGTCACATTGGCAACCAGTATTCACCATCACAG
TACAATGATGAGCTTTCCTCTGCTTATTACGCCTGGAGCAAGTTCAGCAG
TTGAGGACCTCTAACCTGTCTAAAGCTGTGGTTCTTTCTGACATAATGGC
CATGTCCCCAAAGAGAAATCGTTCCATCTCTTGAATTCAGCGAGACTGGG
TCCAAGAAAAGGTTGAAGAATCCTAGAGTCTGGAGCTTGCCCCAAGGGAG
ATTGGTTGGAGACGTCTTAGATTTCATGCAGAGATTCTTCCTTCATCCCT
CCCTCCTGGCACTGTGCACAGTGTTCTCAAATGCAGTCCTCTGGCTGACT
CTCTGAAGACATACTTACTGCTGAGTTTAAGTGTCACCTGCCTACCCACT
TGAACATGTACCTAACATTCCTGAGCTT

TTTTTTCACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCAGACCACTCCCAAC
ACTACTTGAGCTGTTGCTCAGGAGTTTTCAGTTAGATGAGGCTGGCTGTT
CTCTTTACTGTTCCAGTATGTGGTGTCACCCTCCATGGTCCCTCCCTAGC
CACTGTCCTTCCCTATCTATCCCATCCCTGTCTGGCTTGTCTCAGAGCCT
CAAGACTGCAGCTCTTTCTGAGAAAGCCAGGAACACAGCTGTGAGTTCCA
GTCCCCTAGAGGCAGTTCCAACACTCCCTCCTGGCTCCAGATGTAAAGGA
ACAGCTGTAGGGGTGGCAAGAGGCCCACTTGGCAATAGAGCAGAGCCTGC
AAGATGGAGAATAAGGCCAGAGAGCCAAGCAAATGGCAGGACTGTTAAGT
TTCAAGAGGCTGGGAAGGAAAAGTCTCACTCCCTGGACCAGTGACTAAGT
GACAGAGCTTGCCAAATCCCTCCAGTGCTGTCCCCCAGCCCTGCCCATTG
CAAACCTGGCAACCCACACTGCTGCACTCGCAGGACCTCCCATCAGCTCT
ATTTTTTGAGTCCCACTTAATTTAAGAAGGAAAGCAGCCTTCTCTGTCTG
ACTCCACCCTGTCCTTAATACATGCAATTCCCAGCCTAAGATCCGGGTAA
CTTGAGGAATGGGGAGGGAGAGGCAGATGN

Query= MSMg01no503_k20.b1 MSMg01no503_k20.b1 CHROMAT_FILE:
MSMg01no503_k20.b1 PHD_FILE: MSMg01no503_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:01 2005
         (630 letters)



>mm_chr9_35046438_35047467
          Length = 1030

 Score = 1025 bits (530), Expect = 0.0
 Identities = 530/530 (100%)
 Strand = Plus / Minus

                                                                        
Query: 101  tgaacttgccaccagggtggcaaggcagtgccaacctccttttggctatcaggctgacac 160
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 tgaacttgccaccagggtggcaaggcagtgccaacctccttttggctatcaggctgacac 971

                                                                        
Query: 161  cataacatgccatccacatttggggtgggtctttccaccttgaataacctgatcaagaag 220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970  cataacatgccatccacatttggggtgggtctttccaccttgaataacctgatcaagaag 911

                                                                        
Query: 221  atgcctttcaaggtgtgcccaggggcttgattccagattctgtcatgctgtcacattggc 280
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910  atgcctttcaaggtgtgcccaggggcttgattccagattctgtcatgctgtcacattggc 851

                                                                        
Query: 281  aaccagtattcaccatcacagtacaatgatgagctttcctctgcttattacgcctggagc 340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850  aaccagtattcaccatcacagtacaatgatgagctttcctctgcttattacgcctggagc 791

                                                                        
Query: 341  aagttcagcagttgaggacctctaacctgtctaaagctgtggttctttctgacataatgg 400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790  aagttcagcagttgaggacctctaacctgtctaaagctgtggttctttctgacataatgg 731

                                                                        
Query: 401  ccatgtccccaaagagaaatcgttccatctcttgaattcagcgagactgggtccaagaaa 460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730  ccatgtccccaaagagaaatcgttccatctcttgaattcagcgagactgggtccaagaaa 671

                                                                        
Query: 461  aggttgaagaatcctagagtctggagcttgccccaagggagattggttggagacgtctta 520
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670  aggttgaagaatcctagagtctggagcttgccccaagggagattggttggagacgtctta 611

                                                                        
Query: 521  gatttcatgcagagattcttccttcatccctccctcctggcactgtgcacagtgttctca 580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610  gatttcatgcagagattcttccttcatccctccctcctggcactgtgcacagtgttctca 551

                                                              
Query: 581  aatgcagtcctctggctgactctctgaagacatacttactgctgagttta 630
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550  aatgcagtcctctggctgactctctgaagacatacttactgctgagttta 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no503_k20.g1 MSMg01no503_k20.g1 CHROMAT_FILE:
MSMg01no503_k20.g1 PHD_FILE: MSMg01no503_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:02 2005
         (642 letters)



>mm_chr9_34853044_34854085
          Length = 1042

 Score = 1191 bits (616), Expect = 0.0
 Identities = 634/640 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccgcagaccactcccaacactacttgagctgttgctcaggagttttcagttagatgaggc 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccgcagaccactcccaaccctacttgagctgttgctcaggagttttcagttagatgaggc 260

                                                                       
Query: 61  tggctgttctctttactgttccagtatgtggtgtcaccctccatggtccctccctagcca 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tggctgttctctttactgttccagtatgtggtgtcaccctccgtggtccctccctagcca 320

                                                                       
Query: 121 ctgtccttccctatctatcccatccctgtctggcttgtctcagagcctcaagactgcagc 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcccttccctatctatcccatccctgtctggcttgtctcagagcctcaagactgcagc 380

                                                                       
Query: 181 tctttctgagaaagccaggaacacagctgtgagttccagtcccctagaggcagttccaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctttctgagaaagccaggaacacagctgtgagttccagtcccctagaggcagttccaac 440

                                                                       
Query: 241 actccctcctggctccagatgtaaaggaacagctgtaggggtggcaagaggcccacttgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actccctcctggctccagatgtaaaggaacagctgtaggggtggcaagaggcccacttgg 500

                                                                       
Query: 301 caatagagcagagcctgcaagatggagaataaggccagagagccaagcaaatggcaggac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caatagagcagagcctgcaagatggagaataaggccagagagccaagcaaatggcaggac 560

                                                                       
Query: 361 tgttaagtttcaagaggctgggaaggaaaagtctcactccctggaccagtgactaagtga 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 tgttaagtttcaagaggctgggaaggaaaagtctcactccctggaccagtgactaactga 620

                                                                       
Query: 421 cagagcttgccaaatccctccagtgctgtcccccagccctgcccattgcaaacctggcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagagcttgccaaatccctccagtgctgtcccccagccctgcccattgcaaacctggcaa 680

                                                                       
Query: 481 cccacactgctgcactcgcaggacctcccatcagctctattttttgagtcccacttaatt 540
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cccacactgccgcactcgcaggacctcccatcagctctattttttgagtcccacttaatt 740

                                                                       
Query: 541 taagaaggaaagcagccttctctgtctgactccaccctgtccttaatacatgcaattccc 600
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 741 taagaaggaaagcagccttctctgtctgactccaccctgtccttaaaacatgcaattccc 800

                                                   
Query: 601 agcctaagatccgggtaacttgaggaatggggagggagag 640
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agcctaagatccgggtaacttgaggaatggggagggagag 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)