BAC Information

Click to search

BAC

Clone NameMSMg01-503M24
Chromosome9 (Build37)
Map Location 102,275,789 - 102,431,806
singlet/doubletdoublet
Overlap geneKy
Upstream geneEG382099, Ephb1, 9630041A04Rik
Downstream geneLOC664843, Cep63, Anapc13, Amotl2, EG434510, Ryk, Slco2a1, Rab6b, Srprb, Trf, 1300017J02Rik, Topbp1, Cdv3, Bfsp2, Tmem108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503M24.T7 (MSMg01no503_m24.b1)MSMg01-503M24.TJ (MSMg01no503_m24.g1)
ACCAG578840AG578841
length737742
length of high quality
(start - end)		603 (56 - 658)527 (85 - 611)
definitionCHROMAT_FILE: MSMg01no503_m24.b1 PHD_FILE: MSMg01no503_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:12 2005CHROMAT_FILE: MSMg01no503_m24.g1 PHD_FILE: MSMg01no503_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,275,789 - 102,276,386)(102,431,280 - 102,431,806)
sequence
GTTNCNNNNTTCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCG
AGGATCCGCGGAATTCTACACCTGACACGTTTTCAATTCAGTGTCTGCAT
GATTATAAGGTGTGACCAAAACAAAAGAAGATATTAAAAGGGGGAGCAAC
AGATTCAGATAGACATGCCAGATAAAATACGAATGTCCTCCTAGCAGCAT
CCGGAGAGATGTCTGTAAACGAAAACAACACCACAATGATACTTCTCGCC
TACCGCTAAGCAGAAATAACCAACTGCGGATAACAAAAGCCAGTAGGACA
CGCAGCAACGGGAGCTGTCACAAGGCGCCCGTGGGAGTGTTAGTCAGTTC
AAATGCTTTGGAAAAGAAGAGGCCATCACTCCCTGAAGCTTTGGAAACCG
TGCTTTCCACTGCCTTAATTACAGTGACGCTCCGGCTGCCTTAGCAAGAA
TAAGAACAAAACATGGCTTCGAGGTAAAGAAGTTTGTTTTTCTCACACAC
CTCACTTCTGATGCTCACAATCTGGATTGCTTGGGTAACTATGATCCTTG
TCATCTTTCATGGATGCAGTTCTGTCCAGAGGCTTTTCTGCACAGCTGAA
GGTGGACCACAGAGTACATTTGGGTTTTGGGTAACAAGGAGAGAGCATGA
AGTGCGCTCTCTGCTTTGGGCTCTGATGGAAAGCAGCAGACTGGGGGCTG
TAAGGGTCGTCAGCCAAAATGGAGCCGGGGAAAAGGG

CTAATTACTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGCGAGCCTGAGCT
ACAGAGCTAGAGTCTGTCTGGAGCACCATGGGAGGGATAAGGCTTAGTGG
TAGATTGTTTGTTTTCCCTGGGAAAGGCCCTGGATTTGATTCCTCATCAT
CACCTGGAGTAAAGAGCTACAAGATGAAAACCTAATGTAACTCACACAAG
TTAGTAGACAAGGTCAGATGTCAAAGGATAGGAAGGAGGCTCTGGGGTGG
GGCCTAGAGAAATGCCAGGAAGGGCTGTGCTCTCATGGGAAGCGGAAGTG
GAAGTGTTGTGTGAGTGTTGCTTCGAGGTGCAGAGCCAGCAGGTGGCTGA
GGTCAAGTTTTGGAGGACTTTGAAAGACACTGGGAACCCAGGGACAGGGA
TGCCCAAAGACAATGGGGCACCTGGCTCTGGGGCTGGGGATGTCACTGGG
AACTTGGAGAAGTAGAAGGTACTGCTGGAGGGAGAACAGTGGGTCAGCCA
GCATGGATCCTGCCCAGGTTGTCTCTGAAGCTAGGGTCCCAGAGATGGGA
AGTGGAAGTTTGGAGCAGGGAGTTGGGCAGGAGGGCTAGAGGGACCCAGA
AACAGGTATCTGCCTATACTTGGGAGCGGTAATACCAGGTTGGGAAGGCA
CTGCAGCTCACGCCGAAAATAGGTTTGTGTGCTCCTCAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_m24.b1 MSMg01no503_m24.b1 CHROMAT_FILE:
MSMg01no503_m24.b1 PHD_FILE: MSMg01no503_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:12 2005
         (603 letters)



>mm_chr9_102275584_102276586
          Length = 1003

 Score = 1133 bits (586), Expect = 0.0
 Identities = 595/598 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctacacctgacacgttttcaattcagtgtctgcatgattataaggtgtgaccaaa 65
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctacacctgaaacgttttcaattcagtgtctgcatgattataaggtgtgaccaaa 265

                                                                       
Query: 66  acaaaagaagatattaaaagggggagcaacagattcagatagacatgccagataaaatac 125
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 266 acaaaagaagatattaaaagggggagcaacagattcagattgacatgccagataaaatac 325

                                                                       
Query: 126 gaatgtcctcctagcagcatccggagagatgtctgtaaacgaaaacaacaccacaatgat 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gaatgtcctcctagcagcatccggagagatgtctgtaaacgaaaacaacaccacaatgat 385

                                                                       
Query: 186 acttctcgcctaccgctaagcagaaataaccaactgcggataacaaaagccagtaggaca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acttctcgcctaccgctaagcagaaataaccaactgcggataacaaaagccagtaggaca 445

                                                                       
Query: 246 cgcagcaacgggagctgtcacaaggcgcccgtgggagtgttagtcagttcaaatgctttg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cgcagcaacgggagctgtcacaaggcgcccgtgggagtgttagtcagttcaaatgctttg 505

                                                                       
Query: 306 gaaaagaagaggccatcactccctgaagctttggaaaccgtgctttccactgccttaatt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gaaaagaagaggccatcactccctgaagctttggaaaccgtgctttccactgccttaatt 565

                                                                       
Query: 366 acagtgacgctccggctgccttagcaagaataagaacaaaacatggcttcgaggtaaaga 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acagtgacgctccggctgccttagcaagaataagaacaaaacatggcttcgaggtaaaga 625

                                                                       
Query: 426 agtttgtttttctcacacacctcacttctgatgctcacaatctggattgcttgggtaact 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 agtttgtttttctcacacacctcacttctgatgctcacaatctggattgcttgggtaact 685

                                                                       
Query: 486 atgatccttgtcatctttcatggatgcagttctgtccagaggcttttctgcacagctgaa 545
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 atgatccttgccatctttcatggatgcagttctgtccagaggcttttctgcacagctgaa 745

                                                                     
Query: 546 ggtggaccacagagtacatttgggttttgggtaacaaggagagagcatgaagtgcgct 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ggtggaccacagagtacatttgggttttgggtaacaaggagagagcatgaagtgcgct 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no503_m24.g1 MSMg01no503_m24.g1 CHROMAT_FILE:
MSMg01no503_m24.g1 PHD_FILE: MSMg01no503_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:12 2005
         (527 letters)



>mm_chr9_102430961_102431887
          Length = 927

 Score =  988 bits (511), Expect = 0.0
 Identities = 523/527 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagcgagcctgagctacagagctagagtctgtctggagcaccatgggagggataaggct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 846 aaagcgagcctgagctacagagctagagtctgtctggagcaccatgggagggctaaggct 787

                                                                       
Query: 61  tagtggtagattgtttgttttccctgggaaaggccctggatttgattcctcatcatcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tagtggtagattgtttgttttccctgggaaaggccctggatttgattcctcatcatcacc 727

                                                                       
Query: 121 tggagtaaagagctacaagatgaaaacctaatgtaactcacacaagttagtagacaaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tggagtaaagagctacaagatgaaaacctaatgtaactcacacaagttagtagacaaggt 667

                                                                       
Query: 181 cagatgtcaaaggataggaaggaggctctggggtggggcctagagaaatgccaggaaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cagatgtcaaaggataggaaggaggctctggggtggggcctagagaaatgccaggaaggg 607

                                                                       
Query: 241 ctgtgctctcatgggaagcggaagtggaagtgttgtgtgagtgttgcttcgaggtgcaga 300
           |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 606 ctgtgcactcatgggaagcggaagcggaagtgttgtgtgagtgttgcttcgaggtgcaga 547

                                                                       
Query: 301 gccagcaggtggctgaggtcaagttttggaggactttgaaagacactgggaacccaggga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gccagcaggtggctgaggtcaagttttggaggactttgaaagacactgggaacccaggga 487

                                                                       
Query: 361 cagggatgcccaaagacaatggggcacctggctctggggctggggatgtcactgggaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cagggatgcccaaagacaatggggcacctggctctggggctggggatgtcactgggaact 427

                                                                       
Query: 421 tggagaagtagaaggtactgctggagggagaacagtgggtcagccagcatggatcctgcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tggagaagtagaaggtactgctggagggagaacagtgggtcagccagcatggatcctgcc 367

                                                          
Query: 481 caggttgtctctgaagctagggtcccagagatgggaagtggaagttt 527
           |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 366 caggttgtctctgaggctagggtcccagagatgggaagtggaagttt 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |