Query= MSMg01no504_e19.b1 MSMg01no504_e19.b1 CHROMAT_FILE:
MSMg01no504_e19.b1 PHD_FILE: MSMg01no504_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:52 2005
(590 letters)
>mm_chr9_73937815_73938804
Length = 990
Score = 1065 bits (551), Expect = 0.0
Identities = 575/587 (97%), Gaps = 10/587 (1%)
Strand = Plus / Plus
Query: 5 gaattcacaacctgtcaacttgaaatgctatttgtacaagattgtatcacttaatttgct 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacaacctggaaacttgaaatgctatttgtacaagattgtatcacttaatttgct 264
Query: 65 agttttagaatcaatgatggctctacagcacctgccaaaggtgaccaatgagagattgtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agttttagaatcaatgatggctctacagcacctgccaaaggtgaccaatgagagattgtg 324
Query: 125 tagataagtgtcatcaggaattgatgcactttctcatagccacactgtctcagtccagtc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagataagtgtcatcaggaattgatgcactttctcatagccacactgtctcagtccagtc 384
Query: 185 tcattgttttcctttttcctggctaacactatctcatctctggtcagttcactttccttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcattgttttcctttttcctggctaacactatctcatctctggtcagttcactttccttc 444
Query: 245 aaatagttgattatgtccttgctaaaaggacatttactcagttgtctctaatagttggaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaatagttgattatgtccttgctaaaaggacatttactcagttgtctctaatagttggaa 504
Query: 305 acatagcatggaggtccttgc-tgacagatttccaaagaaaccaggaatattaaatacat 363
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 505 acatagcatggaggtccttgcct-acagatttccaaagaaaccaggaatattaaatacat 563
Query: 364 agggttgtctttctgatgggaaaggtaaagaacttgttcttccacccagaaagctaaaga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agggttgtctttctgatgggaaaggtaaagaacttgttcttccacccagaaagctaaaga 623
Query: 424 attggagttggaagtgattaatggttgggtgatctgcctcatctgttggtccaggccata 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 attggagttggaagtgattaatggttgggtgatctgcctcatctgttggtccaggccata 683
Query: 484 tcaagctcctacacgcaggactggaaatagctagtaatctaaatgacccttaaagtgaga 543
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcaagc----aca----ggactggaaatagctagtaatctaaatgacccttaaagtgaga 735
Query: 544 ggctcccctaatctcacacaaccaggaccagaagtggctaataaccc 590
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ggctcccctaatctcacacaaccaggaccagaagtggctaataaccc 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_e19.g1 MSMg01no504_e19.g1 CHROMAT_FILE:
MSMg01no504_e19.g1 PHD_FILE: MSMg01no504_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:52 2005
(507 letters)
>mm_chr9_74140164_74141070
Length = 907
Score = 919 bits (475), Expect = 0.0
Identities = 481/483 (99%)
Strand = Plus / Minus
Query: 25 atggccactggcacattttcttgattattggttgatgctagagagtctatatcacaagga 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 atggccactggcacattttcttgattattggttgatgctagagagtctatatcacaagga 848
Query: 85 ggttcattttctgggtctgggtggtacaaaaaagcaacctgaacaagccatgaagagcaa 144
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 847 ggttcattttctgggtctgggtggtacaaaaaagcaacctgaacaagtcatgaagagcaa 788
Query: 145 ctcagtaagccaaatttctccattgctctacactaattcctgcctccaagtttctgcctt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ctcagtaagccaaatttctccattgctctacactaattcctgcctccaagtttctgcctt 728
Query: 205 gagctcatgcccttgcttcctcacacttccagtttcttttgttaattgtgtttatcacag 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gagctcatgcccttgcttcctcacacttccagtttcttttgttaattgtgtttatcacag 668
Query: 265 cagagagaaaacaaacacaaatactgtgttccagaaatgtttttgtaactttttggggaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 cagagagaaaacaaacacaaatactgtgttccagaaatgtttttgtaactttttggggaa 608
Query: 325 gtgcagagttaagtggcctctgagttctatgggtagcaatgtaggtatacagtatttgac 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gtgcagagttaagtggcctctgagttctatgggtagcaatgtaggtatacagtatttgac 548
Query: 385 aatatttgacagacacccttagctgcctgctgctcaaaatttttcaagtcccagtcactg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aatatttgacagacacccttagctgcctgctgctcaaaatttttcaagtcccagtcactg 488
Query: 445 gtaactcatatccctcatgaggcagcaaaaagaggtcatttggaagcaaaagaagttatt 504
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 487 gtaactcatatccctcatgaggcagcaaaaagaggtcatttggaagcaaaataagttatt 428
Query: 505 aag 507
|||
Sbjct: 427 aag 425
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
