Query= MSMg01no504_k20.b1 MSMg01no504_k20.b1 CHROMAT_FILE:
MSMg01no504_k20.b1 PHD_FILE: MSMg01no504_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:21 2005
(627 letters)
>mm_chr9_112594698_112595722
Length = 1025
Score = 1143 bits (591), Expect = 0.0
Identities = 615/623 (98%), Gaps = 2/623 (0%)
Strand = Plus / Minus
Query: 5 gaattctatcatttatttaaggaccacatatttcacatttttctagtaatacaaaagaag 64
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 gaattctatcagatatttaaggaccacatatttcacatttttctagtaatacaaaagaag 766
Query: 65 ggagcatttaacacaacatcctattaagaatctaacaatctttcctgaaaggctggcaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ggagcatttaacacaacatcctattaagaatctaacaatctttcctgaaaggctggcaaa 706
Query: 125 gctagttaaaaaacttgaaatcaacattgcttatgaatagagatattaaaaatgcaaact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gctagttaaaaaacttgaaatcaacattgcttatgaatagagatattaaaaatgcaaact 646
Query: 185 ttaacaaactaacacatcagatgtaacaaaatctatccagcaaaaataaaaagaatatat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ttaacaaactaacacatcagatgtaacaaaatctatccagcaaaaataaaaagaatatat 586
Query: 245 catagaaataaatgtaaatttaattcagtattctagactagaatagaagtaatggttttt 304
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 585 catagaaataaatgtaaatttagttcagtattctagactagaatagaagtaatggttttt 526
Query: 305 aatcatcttaatagatgcaagaaaacttataaaataccctgtagccttcataataaaatg 364
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aatc-tcttaatagatgcaagaaaacttataaaataccctgtagccttcataataaaatg 467
Query: 365 tcaacaaaattactgaaatgggaagcattctagatatgtagagaagcccacagttattgc 424
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 466 tcaacaaaattactgaaatgggaagcattctagctatgtagagaagcccacagttattgc 407
Query: 425 catttcacatgaatagtaggtgtttacactgtaacaatccgaatatgtacaccagccaca 484
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 406 catttcacatgaatagtaggtgtttacactgtaacaaaccgaatatgtacaccagccaca 347
Query: 485 ttttcaccattcagttggggattggagctagttggtgattaaaaaaatatgtagtaccat 544
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 346 ttttcaccattcagttggggattggagctagttggtgatt-aaaaaatatgtagtaccat 288
Query: 545 tcgggtcataaagagaagagagaatggaaaactatttagccacagaatatatgatactat 604
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 287 tcgggtcataaagagaagagagagtggaaaactatttagccacagaatatatgatactat 228
Query: 605 ataaagaaagctattatagttaa 627
|||||||||||||||||||||||
Sbjct: 227 ataaagaaagctattatagttaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1025
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1015
Effective search space: 626255
Effective search space used: 626255
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_k20.g1 MSMg01no504_k20.g1 CHROMAT_FILE:
MSMg01no504_k20.g1 PHD_FILE: MSMg01no504_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:21 2005
(568 letters)
>mm_chr9_112410754_112411721
Length = 968
Score = 1067 bits (552), Expect = 0.0
Identities = 564/568 (99%)
Strand = Plus / Plus
Query: 1 aggataactagctactaagcttatctgtctttattctctaggatgattacaagaatattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggataactagctactaagcttatctgtctttattctctaggatgattacaagaatattt 260
Query: 61 tcataaatctaaatttatcttcttctgacttctaggttttgatgttaagttatataaatt 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcataaatctaaatttatcttctgctgacttctaggttttgatgttaagttatataaatt 320
Query: 121 taaagaaagcaattttccccagggggaaactaattgtgttgacctggagattaagataag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaagaaagcaattttccccagggggaaactaattgtgttgacctggagattaagataag 380
Query: 181 ggactgcagagctgtctccagacatcagctactgtaggaatgtaatagtctttgtctccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggactgcagagctgtctccagacatcagctactgtaggaatgtaatagtctttgtctccc 440
Query: 241 tttctgaaaatgtactgtgtaactccccatccttcttcctccattgaatccatctttttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttctgaaaatgtactgtgtaactccccatccttcttcctccattgaatccatctttttt 500
Query: 301 agaggtctacatatttatttaagtatgtagataaggtatttttgccgattaacatttact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaggtctacatatttatttaagtatgtagataaggtatttttgccgattaacatttact 560
Query: 361 atcaattttacaggatctagactaacctaagagaccaggctctgagcatgtttgggagtt 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 atcaattttacaggatctagactaacctaagagaccaggctctgagtatgtttgggagtt 620
Query: 421 tctagattaggttaagtgtagagagaagatccactctaatggcagaggacaccattttgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctagattaggttaagtgtagagagaagatccactctaatggcagaggacaccattttgt 680
Query: 481 ggccttgagctctggaccaactgaaaagccaaaagcccaaaggcaaaagcaagctgggca 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggccttgagctctgtaccaactgaaaagccaaaagcccaaaggcaaaagcaagctgggca 740
Query: 541 ccagcactcatgtgtttcctgactgtac 568
|||| |||||||||||||||||||||||
Sbjct: 741 ccagtactcatgtgtttcctgactgtac 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
