BAC Information

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BAC

Clone NameMSMg01-504N20
Chromosome9 (Build37)
Map Location 20,273,859 - 20,274,426
singlet/doubletsinglet
Overlap geneZfp426
Upstream geneOlfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26
Downstream gene5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504N20.T7 (MSMg01no504_n20.b1)MSMg01-504N20.TJ (MSMg01no504_n20.g1)
ACCAG579640AG579641
length769786
length of high quality
(start - end)		689 (66 - 754)587 (64 - 650)
definitionCHROMAT_FILE: MSMg01no504_n20.b1 PHD_FILE: MSMg01no504_n20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:37 2005CHROMAT_FILE: MSMg01no504_n20.g1 PHD_FILE: MSMg01no504_n20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAA
TTCTCACCTTTACGATACCGAATGGCTGAGAAGCACCTGAAAAAATGTTC
AGCATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGATTCC
ATCTCACACCAGTCAGAATGACTAAGATCGAAAATTCAGGTGACAGCAGA
TGCTGGCGAAGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
TTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGATTCCTCAGTA
AATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTTCTGGGCATA
TATCCAAAAGATGTTCCAACTGGTAAGAAGGACACATGCTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAATCCAGATGCC
CCTCAACAGAGGAATGGATACAAAAAATATGATACATTTACACAATGGAT
ACAAAAAATATGATACATTTACTCAGCTATTAAAAGGAATGAATTTATGA
AATTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCATGAGTGAGGTA
ACACAATCACAAAAGAATGCAAATGATATGTGCTCACTGATAAGTGGATA
TTAGCCCAGAAACTTAGAATACCCAAGATATAAGATACAATTTGCCAAAC
GCATGAAACTCAAGAGGAACAAAGACCAAAGTGTGGACACTTTGCCCCTT
CTTAGAATTGGGATCAAAC

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACTAGAGAGAAGCCTAGTTGATGGAAGCAATGTGAGG
AAGCCCTTGTTTGTGCTCATGTACTTTGAAGACATGATGGTACTCACACT
GGGGAGAAACTATGAAAATTAGATACTTAGCTTAGAGCAGTGCTGTGTTG
CCATACTGAGCAACACAAATACTCCATGTCAAAAAAAATTAAAGTGGATG
CTGACAAGATAGCTCAGTGGGTAAAAGCACTTGATGGGAATGTCTGACAG
CTTGAATCTGACCCACACTCACGTAAATCAGACAGATGTAGTGGCATGCA
TCTGTATTCTCAGCATTCCTACAAGATCACCTGCAACCTTGCAGGCCAGC
TAGTTTATGTAGCATGGCAGAGAGGAAGACTGACTCAACAAGGTAGAAGA
TTTAATGCCTTAAAGTTGACCTCTGATCTCCATGTGTCTGCCCACCCTCC
TACATATACCACAGTAATAAAAAAAATGTTTTTTTTCAAACAAAAGCATT
CTCCATACACTCCTGACTACCCATTTTCTATCCCTGAATCCCACATTGTA
AAGAGAGAATTGGCTCCTAAAAAGCTGCCCTCTGACCTCCACATGAATGC
TGTGGCATGCACTCCCCCCAATAATAGTACATTTTAAAAATTCTAGTGAG
GGACTGCANAGATGATTTGAATAGTTACAGGCACCTGCTGTACTTTCAGA
GGCCAGGCTTCAGGTCCCAGCATCACATGGTAGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_n20.g1 MSMg01no504_n20.g1 CHROMAT_FILE:
MSMg01no504_n20.g1 PHD_FILE: MSMg01no504_n20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:37 2005
         (587 letters)



>mm_chr9_20273443_20274428
          Length = 986

 Score = 1046 bits (541), Expect = 0.0
 Identities = 563/571 (98%), Gaps = 4/571 (0%)
 Strand = Plus / Minus

                                                                       
Query: 18  ttgatggaagcaatgtgaggaagcccttgtttgtgctcatgtactttgaagacatgatgg 77
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 ttgatggaagcaatgtgaggaagcccttgtttgtgctcatgtactttgaagacatgatgg 925

                                                                       
Query: 78  tactcacactggggagaaactatgaaaattagatacttagcttagagcagtgctgtgttg 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 tactcacactggggagaaactatgaaaattagatacttagcttagagcagtgctgtgttg 865

                                                                       
Query: 138 ccatactgagcaacacaaatactccatgtcaaaaaaaattaaagtggatgctgacaagat 197
           |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 864 ccatactgagcaacacaaatactccatgtc-aaaaaaattaaagtggatgctggcaagat 806

                                                                       
Query: 198 agctcagtgggtaaaagcacttgatgggaatgtctgacagcttgaatctgacccacactc 257
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 805 agctcagtgggtaaaagcacttgatggaaatgtctgacagcttgaatctgacccacactc 746

                                                                       
Query: 258 acgtaaatcagacagatgtagtggcatgcatctgtattctcagcattcctacaagatcac 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acgtaaatcagacagatgtagtggcatgcatctgtattctcagcattcctacaagatcac 686

                                                                       
Query: 318 ctgcaaccttgcaggccagctagtttatgtagcatggcagagaggaagactgactcaaca 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgcaaccttgcaggccagctagtttatgtagcatggcagagaggaagactgactcaaca 626

                                                                       
Query: 378 aggtagaagatttaatgccttaaagttgacctctgatctccatgtgtctgcccaccctcc 437
           |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 625 aggtagaagatttaatgccttaaagttgacctctcatctccatgtttctgcccaccctcc 566

                                                                       
Query: 438 tacatataccacagtaat-aaaaaaaatgttttttttcaaacaaaagcattctccataca 496
           |||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||
Sbjct: 565 tacatataccacagtaataaaaaaaaatg--ttttttcaaacaaaagcattctccataca 508

                                                                       
Query: 497 ctcctgactacccattttctatccctgaatcccacattgtaaagagagaattggctccta 556
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctcctgactacccattttctatccctgaatcccacattgtaaagagagaattggctccta 448

                                          
Query: 557 aaaagctgccctctgacctccacatgaatgc 587
           |||||||||||||||||||||||||||||||
Sbjct: 447 aaaagctgccctctgacctccacatgaatgc 417


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 986
Length adjustment: 10
Effective length of query: 577
Effective length of database: 976
Effective search space:   563152
Effective search space used:   563152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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