BAC Information

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BAC

Clone NameMSMg01-505A06
Chromosome9 (Build37)
Map Location 9,103,586 - 9,103,803
singlet/doubletsinglet
Overlap gene9030420J04Rik
Upstream geneAK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6, Pgr
Downstream geneCntn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505A06.T7 (MSMg01no505_a06.b1)MSMg01-505A06.TJ (MSMg01no505_a06.g1)
ACCAG579756AG579757
length801764
length of high quality
(start - end)
219 (74 - 292)580 (85 - 664)
definitionCHROMAT_FILE: MSMg01no505_a06.b1 PHD_FILE: MSMg01no505_a06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:49 2005CHROMAT_FILE: MSMg01no505_a06.g1 PHD_FILE: MSMg01no505_a06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGGGTCC
GCGGAATTCCACAAATTACGGGGCTTGGATTCCATCATGCATACAAATTG
ACTATGGTGTGCATTAAATTTTAGAGAAGCACTTAGTTTAAGATGGGGCC
AAAAATAGCTCTTCTGTATTGACAGAGATGACAATCAAGTCCAGATCCAC
ACTAGGGTTTCAGAGGGAGACTGTTGTTGTTGCTGTTGTTGTTGTTGTTA
TGGTAGTGGTGGTTGTTGTTAATGTGGTATGGGGGGTATCTGNCANNCAN
NCNGNCNGACNGACNGGCTGTTTTTTTTTTCTAGAGGGTCGCAGGCAAGA
ACCACCTCCCTTTTTTTTCAATTTATATTACCACTTATAGACCCAGTAGC
TTGCCTTGGATATTATCCACTAGGGAAGCTCTGGGGTTCTTTCTTTCTGC
CATCCCAGCTCTTTGAGCATCTCTCATTCTTTGATTATCTGGATTCCTAG
GAGCACATTCATGGTTTTAGTATAGTCTTTGCACGCATTTTGTTAACTAA
TCTCTAAATTTCCCCTTGCATAATATCTGATTTGGGCTTTATTTGGTAAT
GTTTGTTGCCCTCTGTATATTACCCTGTTACAGCTAGCGTGATCGCGACC
TGCGTTACATATGCGCGATTCCTTTGTTTGATTCACTATTGAGATGGGTG
TTAGAATGTTATCTTTGCCTTTAACACTGTGTTGGACCCTCTTATATTTC
TCTGGTATACCATGCTTGTTATCGTTGCATATTTTCCATGCCACTCTGTA
T
NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTACCAAAAAAAGGCTGTTTGNGAGGATTGTATTGAGTA
TTCTTCCATCGATATTCATAAGGGAAATTGGTCTAAAGTTCTCTTTCTTT
GTTAAATCTTTGTATGGTTTAGGTATCAGAGTAATTGTGGCTTCATAGAA
TGAATTGGGTAGAGTACCTTCTGTTTCTATTTTGTGGAATAGTTTGAGGG
GAGTTGGAATTAGGTCTTCTCTGAAGGTCTGATAGAACTCTGCACTAAAC
CCATCTGGTCCTGGGCTTTTTTTTTTTGGGAGACTATTAATAACTGCTTC
TATTTCTATAGAGGAAATGGGACTGTTAAAGTCATTAATATAATCCTGAT
TTAACTGTGATCCCTGGTATCTGTCTAGAAAATTGTCAATTTCATCCAGC
TTTGTCAGTTTTGTTGAGTATAGCCTTTTGGAGTAGGATCTGATCATGTT
TTGGATTTCCTCAGGATCTGTTGTTATGTCTCCTTTTTCATTCCTGATTT
TGTTAATTAGGATACTGTCCCTGTGCCCTCTAGTTAGCCTGGCTAAGGAT
TTATCTATCTTGTTGATTTTCTCAAAAAAAAAAAAAAAAAAAAAGCTACA
GGTTTCCATGATTCTTTGTATAGAGCTTTTTCTTTCCACTGGGGTGATTT
CAGCCCTGAGTTTGATTATTTCCTGCCTTCTTCAGGGAATTTGCTTCCTT
TTGTTTAAAGCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_a06.b1 MSMg01no505_a06.b1 CHROMAT_FILE:
MSMg01no505_a06.b1 PHD_FILE: MSMg01no505_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:49 2005
         (219 letters)



>mm_chr9_9103386_9104003
          Length = 618

 Score =  377 bits (195), Expect = e-109
 Identities = 213/219 (97%), Gaps = 1/219 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttggattccatcatgcatacaaattgactatggtgtgcattaaattttagagaagcact 60
           |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 cttggactccatcatgcatacaaattgactatggtgtgcattaa-ttttagagaagcact 259

                                                                       
Query: 61  tagtttaagatggggccaaaaatagctcttctgtattgacagagatgacaatcaagtcca 120
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 260 tagtttaagatgggaccaaaaatagctcttctgtattgacagagatgacaatcatgtcca 319

                                                                       
Query: 121 gatccacactagggtttcagagggagactgttgttgttgctgttgttgttgttgttatgg 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gatccacactaggatttcagagggagactgttgttgttgctgttgttgttgttgttatgg 379

                                                  
Query: 181 tagtggtggttgttgttaatgtggtatggggggtatctg 219
           |||||||||||||||||||||||||||||||||| ||||
Sbjct: 380 tagtggtggttgttgttaatgtggtatggggggtgtctg 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 618
Length adjustment: 9
Effective length of query: 210
Effective length of database: 609
Effective search space:   127890
Effective search space used:   127890
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)