Query= MSMg01no505_c22.b1 MSMg01no505_c22.b1 CHROMAT_FILE:
MSMg01no505_c22.b1 PHD_FILE: MSMg01no505_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:02 2005
(659 letters)
>mm_chr9_91558812_91559870
Length = 1059
Score = 1226 bits (634), Expect = 0.0
Identities = 654/661 (98%), Gaps = 3/661 (0%)
Strand = Plus / Minus
Query: 1 attccttacattg-tctctagatgagctacacaccatagctttcttttgctttattctat 59
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 attccttacattgat-tctagatgagctacacaccatagctttcttttgctttattctat 729
Query: 60 tcagaaggtagtacaaggataagtcataggatatcttccaactttttaaaaaccactaga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tcagaaggtagtacaaggataagtcataggatatcttccaactttttaaaaaccactaga 669
Query: 120 attattaaagattagaaggaagtcaaactcttattcaataaaagagaagattaaggctga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 attattaaagattagaaggaagtcaaactcttattcaataaaagagaagattaaggctga 609
Query: 180 tagatgtcagataacttgtttggggacaggttctgttacatcataaagcaataataaaag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tagatgtcagataacttgtttggggacaggttctgttacatcataaagcaataataaaag 549
Query: 240 gcctatgactaaaccttggtcaaattgatttctactccagcatctggcataaactcatca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gcctatgactaaaccttggtcaaattgatttctactccagcatctggcataaactcatca 489
Query: 300 aaatgacacgtcttgtcaggtattaatgactataacaagctctaatatcctattaaatgg 359
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 488 aaatgacacttcttgtcaggtattaatgactataacaagctctaatatcctattaaacgg 429
Query: 360 cagtagtttggcttcttatagctagtgatttatcttctaccctatttaactatcatttgt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cagtagtttggcttcttatagctagtgatttatcttctaccctatttaactatcatttgt 369
Query: 420 caccttcttcacagacacggactttataaaatccttctattggcacagacatgagacaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 caccttcttcacagacacggactttataaaatccttctattggcacagacatgagacaaa 309
Query: 480 ttgctactatttaaatagtagaggtgaggaaacatttttataaagaccatatttcttatt 539
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 308 ttgctactatttaaatagtagaggtgaggaaacatttttataaagaccgtatttcttatt 249
Query: 540 attgatttctaaatatttattaactaagtgtcccatttagctgttttc-tttttttaaat 598
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 248 attgatttctaaatatttattaactaagtgtcccatttagctgttttcttttttttaaat 189
Query: 599 aaatatttaaatggaatttatttatttatattagntatatttataactacagactaatgg 658
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 188 aaatatttaaatggaatttatttatttatattagttatatttataactacagactaatgg 129
Query: 659 a 659
|
Sbjct: 128 a 128
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_c22.g1 MSMg01no505_c22.g1 CHROMAT_FILE:
MSMg01no505_c22.g1 PHD_FILE: MSMg01no505_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:02 2005
(606 letters)
>mm_chr9_91401439_91402444
Length = 1006
Score = 1125 bits (582), Expect = 0.0
Identities = 602/614 (98%), Gaps = 10/614 (1%)
Strand = Plus / Plus
Query: 1 tttataatgcttacatgggacgagactgcattaggttgtggtattctttctctttgtata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tttataatgcttacatgggacgagactgcattaggttgtggtattctttctctttgtata 254
Query: 61 gagtatagctaagtagccaaaccttgtgctcatgtgcttagggtactgtgaatgatgtac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gagtatagctaagtagccaaaccttgtgctcatgtgcttagggtactgtgaatgatgtac 314
Query: 121 agtaccactctgatagtgttttgttagtgcagaagcaacatcaacttatggataagccta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 315 agtaccactctgatagtgttttgttagtgcagaagcaacatcaacttatggataaaccta 374
Query: 181 ccttgaaaatgtagtgataaccattaaaaacaattgcctcttcatctctaaaaccttcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ccttgaaaatgtagtgataaccattaaaaacaattgcctcttcatctctaaaaccttcta 434
Query: 241 gagaataatgtagaacaagtgtggcatatatatatatatatatatatata--------ct 292
|||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 435 gagaataaag--gaacaagtgtggcatatatatatatatatatatatatatatatatact 492
Query: 293 gggatactagctactaaagtgggtacagattgagaatgaattcagtatgactgggaattt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gggatactagctactaaagtgggtacagattgagaatgaattcagtatgactgggaattt 552
Query: 353 atatacgagcatcagagacagaagagaagggaaaaggaaacagagtgtgggtattgggat 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 atatacgagcatcagagacagaagagaagggaaaaggaaacagagtgtgggtattgggat 612
Query: 413 attgttatgagcacacctcaagattaacgaagagacagaaaattatcattatgaagatat 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 attgttatgagcacacctcaagattaacgaagagacagaaaattatcattatgaagatat 672
Query: 473 agagggcttaagaggatagaggaaagagaaatgaggtagaaatgagaggagaaaattata 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 agagggcttaagaggatagaggaaagagaaatgaggtagaaatgagaggagaaaattata 732
Query: 533 ggttattggtaattgaaatagtagagagaccacagcagaataagtatagaaacagaatgg 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ggttattggtaattgaaatagtagagagaccacagcagaataagtatagaaacagaatgg 792
Query: 593 ttatcaaatgtaat 606
||||||||||||||
Sbjct: 793 ttatcaaatgtaat 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
