BAC Information

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BAC

Clone NameMSMg01-505I21
Chromosome9 (Build37)
Map Location 67,634,427 - 67,837,271
singlet/doubletdoublet
Overlap geneEG244911, Vps13c
Upstream geneAph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1, Tln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik
Downstream geneLOC100041451, Rora, 9530091C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505I21.T7 (MSMg01no505_i21.b1)MSMg01-505I21.TJ (MSMg01no505_i21.g1)
ACCAG580165AG580166
length766761
length of high quality
(start - end)		575 (74 - 648)623 (79 - 701)
definitionCHROMAT_FILE: MSMg01no505_i21.b1 PHD_FILE: MSMg01no505_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:29 2005CHROMAT_FILE: MSMg01no505_i21.g1 PHD_FILE: MSMg01no505_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,634,427 - 67,635,001)(67,836,713 - 67,837,271)
sequence
NNTTAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGCAGTCTCACCTCCAGGCTGTACCACTTACATCTGTAA
ACCTAAGGGGAGTCATGTCCCTTTCTGAGCCTCATTTTCTCCATCTGCAC
AGTGGGAATGTTAACAGTCCACTTCTCAGGAAAGTTACCTTGAGGATCAG
GTGTCACACGGGTACCCTGTCTGAGAGATACAGAGCTCTTTTTGGCTGGC
TGGAGATTAGGAAGGTGTTGTCAATAGCCCAGAAAGAGTGTTCCCTGGCT
TCTTAGAGTTAAATATTGCTAGGTATTATGTGTGGTTTGTTCCTGAAAGA
TTTGGCTGTGGCTCCTGGAAGCGTCATCCCAGTGTGGAGGTTTGGAGGTG
GCAGAACCTTTAAGAGATGGTGTCCCTGTGAAGTGATGATGTCATGGGTG
TCCTGCCCTCACAGACAGGCCAGTCTCTTGTAAGTGCATCTGGTAGAGGC
CTCAGACCTGGATTTGTTCATATCAAAAGGCATCTCACCATAAGAAGAGT
GAGCATAGCTTTTCTCCTCTCTCTTTTATGTACATGTGTATCAGCTGGTG
TGTGGGGTATACACGTGTTCATGTGTGCTCATGTGCATGTAAAGGCCCGA
GGTTAACCTTGGTTATCATCCCTTCAGTGGCCACCAGCTTATTGTTGTTG
AGTTTTTGTTTGGGTGTTTTGTTTTTAAGGAAGGTCTCTCACTGGGATTG
TAAGCATATGCCACCC

TTTTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGGACGGATAGCTATAGGA
CCCTTGATCCTTGCCGAGCAAGAGCCAGTGGTGACTTCCTTCTTGTGACA
TTTCAATACCCACACACAGGTCTAGCCTGTCTCTGATGAGCATCCACACA
CCTGACCCTAAGCCCAGTGTAGTATCAGATAGCAAAGCCTTGTACCAAAG
ACAACTGACTGTTTTGTGCATTTTTTAAGCTCTCTCTTCTCCTGAGCACT
ACAGTTACACATTCTCCTACCATAATAAGTCTCTATTCTCTCTCCTGCTC
CAACTATCAGAGTTTAAATCTTGTCATCTCCTAGGTGACACACTCTGGTA
TGGAGTCTCCAAGACCTCCACTCAGATTTTTCAAAGGTTTATTTTGAAGT
GTGTGTGTGAGTATGGGTGTGTGCACTTAAGTGCAGATCCCCATGGATGT
CAGAGGCATCAGCCAAAGGTGGGTGCTGACAACTGAACCTGGGCTCCCAC
GAGAGCAGCAAGTGCTCTTGTCTGGCAAGCCATCTCCATAGCCCGTATTC
ACATTCCAACTAATGGACCAATACGGTGATTGAATAACCCTTCCTTATAG
GTATCCTCTTTAGAAAGGCTCATTTCAATGTCTAGATTCTGTACTTCATT
CAGCTTTTCTTACTTGTCCAGGTACATTTAAATGGAATAGGGAGGAGCTG
GGGTTGCAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_i21.b1 MSMg01no505_i21.b1 CHROMAT_FILE:
MSMg01no505_i21.b1 PHD_FILE: MSMg01no505_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:29 2005
         (575 letters)



>mm_chr9_67634227_67635201
          Length = 975

 Score = 1104 bits (571), Expect = 0.0
 Identities = 574/575 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccaggctgtaccacttacatctgtaaacctaaggggagtcatgtccctttctgagcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccaggctgtaccacttacatctgtaaacctaaggggagtcatgtccctttctgagcctc 260

                                                                       
Query: 61  attttctccatctgcacagtgggaatgttaacagtccacttctcaggaaagttaccttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttctccatctgcacagtgggaatgttaacagtccacttctcaggaaagttaccttga 320

                                                                       
Query: 121 ggatcaggtgtcacacgggtaccctgtctgagagatacagagctctttttggctggctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatcaggtgtcacacgggtaccctgtctgagagatacagagctctttttggctggctgg 380

                                                                       
Query: 181 agattaggaaggtgttgtcaatagcccagaaagagtgttccctggcttcttagagttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 agattaggaaggtgttgtcaatagcccagaaagagtgttccctggcttcttagagctaaa 440

                                                                       
Query: 241 tattgctaggtattatgtgtggtttgttcctgaaagatttggctgtggctcctggaagcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattgctaggtattatgtgtggtttgttcctgaaagatttggctgtggctcctggaagcg 500

                                                                       
Query: 301 tcatcccagtgtggaggtttggaggtggcagaacctttaagagatggtgtccctgtgaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcatcccagtgtggaggtttggaggtggcagaacctttaagagatggtgtccctgtgaag 560

                                                                       
Query: 361 tgatgatgtcatgggtgtcctgccctcacagacaggccagtctcttgtaagtgcatctgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgatgatgtcatgggtgtcctgccctcacagacaggccagtctcttgtaagtgcatctgg 620

                                                                       
Query: 421 tagaggcctcagacctggatttgttcatatcaaaaggcatctcaccataagaagagtgag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagaggcctcagacctggatttgttcatatcaaaaggcatctcaccataagaagagtgag 680

                                                                       
Query: 481 catagcttttctcctctctcttttatgtacatgtgtatcagctggtgtgtggggtataca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catagcttttctcctctctcttttatgtacatgtgtatcagctggtgtgtggggtataca 740

                                              
Query: 541 cgtgttcatgtgtgctcatgtgcatgtaaaggccc 575
           |||||||||||||||||||||||||||||||||||
Sbjct: 741 cgtgttcatgtgtgctcatgtgcatgtaaaggccc 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no505_i21.g1 MSMg01no505_i21.g1 CHROMAT_FILE:
MSMg01no505_i21.g1 PHD_FILE: MSMg01no505_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:29 2005
         (623 letters)



>mm_chr9_67836713_67837735
          Length = 1023

 Score =  996 bits (515), Expect = 0.0
 Identities = 548/559 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgggacggatagctataggacccttgatccttgccgagcaagagccagtggtgacttc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 559 tttgggacggatagctataggacccttgatccttgccgagcaagagccagcggtgacttc 500

                                                                       
Query: 61  cttcttgtgacatttcaatacccacacacaggtctagcctgtctctgatgagcatccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cttcttgtgacatttcaatacccacacacaggtctagcctgtctctgatgagcatccaca 440

                                                                       
Query: 121 cacctgaccctaagcccagtgtagtatcagatagcaaagccttgtaccaaagacaactga 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cacctgaccctaagcccagtgcagtatcagatagcaaagccttgtaccaaagacaactga 380

                                                                       
Query: 181 ctgttttgtgcattttttaagctctctcttctcctgagcactacagttacacattctcct 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctgttttgtgcattttttaagttctctcttctcctgagcactacagttacacattctcct 320

                                                                       
Query: 241 accataataagtctctattctctctcctgctccaactatcagagtttaaatcttgtcatc 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 accataagaagtctctattctctctcctgctccaactatcagagtttaaatcttgtcatc 260

                                                                       
Query: 301 tcctaggtgacacactctggtatggagtctccaagacctccactcagatttttcaaaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 259 tcctaggtgacacactctggtatggagtctccaagacctccactcggatttttcaaaggt 200

                                                                       
Query: 361 ttattttgaagtgtgtgtgtgagtatgggtgtgtgcacttaagtgcagatccccatggat 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 199 ttattttgaagtgtgtgtgtgagtatgggtgtgtgcacttaagtgcagatccccgtagat 140

                                                                       
Query: 421 gtcagaggcatcagccaaaggtgggtgctgacaactgaacctgggctcccacgagagcag 480
           ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 139 gtcagaggcatcagccaaaggtgggtgctgagaactgaacctgggcccccacgagagcag 80

                                                                       
Query: 481 caagtgctcttgtctggcaagccatctccatagcccgtattcacattccaactaatggac 540
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 79  caagtgctcttgtctggcaagccatctccatagcccgtattcacatcccaactaatggac 20

                              
Query: 541 caatacggtgattgaataa 559
           |||||| ||||||||||||
Sbjct: 19  caatacagtgattgaataa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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