Query= MSMg01no505_m05.b1 MSMg01no505_m05.b1 CHROMAT_FILE:
MSMg01no505_m05.b1 PHD_FILE: MSMg01no505_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:45 2005
(598 letters)
>mm_chr9_53334128_53335125
Length = 998
Score = 1035 bits (535), Expect = 0.0
Identities = 572/593 (96%), Gaps = 14/593 (2%)
Strand = Plus / Plus
Query: 20 ttatccttcctctgacatttaaagtatctaccacaacccttttaactcagaacccttgct 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ttatccttcctctgacatttaaagtatctaccacaacccttttaactcagaacccttgct 279
Query: 80 ttcaacctctgtgacatctctcttttggtttcctcctttatttatggctcagttgaggta 139
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 280 ttcaacctctgtgacatctctcttttggtttcctcctttatttatggctcagttaaggta 339
Query: 140 tcgctgttctgtgtacacactgtaaacaagcctggagagagtgaatggcatggtaatttt 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tcgctgttctgtgtacacactgtaaacaagcctggagagagtgaatggcatggtaatttt 399
Query: 200 tagctgactatttttctcagtcactagacagctgaatatttgaaaacagagcagtaatct 259
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 400 tagctgactatttttctcagtcactggacggctgaatatttgaaaacagagcagtaatct 459
Query: 260 ttgaaatctgtaactccagttcta--------------ctataaacaatgtgacttaata 305
||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 460 ttgaaatctgtaattccagttctagtggtaaacacctactataaacaatgtgacttaata 519
Query: 306 ctttttttaaaaaaaagatgtatttatctatttaatgtatgtgagtacactgtagctgta 365
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 cttttttaaaaaaaaagatgtatttatctatttaatgtatgtgagtacactgtagctgta 579
Query: 366 cagatggttgtgagccttcatgtggttgttgggaattaaattttggatctttgctcgctt 425
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 580 cagatggttgtgagccttcatgtagttgttgggaattaaattttggatctttgctcgctt 639
Query: 426 cagtcaaccctgctcgctcagtccctgctcgctttcgcccaaagatttatttattattat 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 cagtcaaccctgctcgctcagtccctgctcgctttcgcccaaagatttatttattattat 699
Query: 486 aaataagtacactgtagctgtcttcagacacaccagaagagggcatcagatttcattatg 545
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 700 aaataagtacactgtagctgtcttcagacacaccagaagagggcatcagatttcattacg 759
Query: 546 agtggttgtaagccaccatatggttgctgggatttgaactcaggacctttgga 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 agtggttgtaagccaccatatggttgctgggatttgaactcaggacctttgga 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_m05.g1 MSMg01no505_m05.g1 CHROMAT_FILE:
MSMg01no505_m05.g1 PHD_FILE: MSMg01no505_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:45 2005
(683 letters)
>mm_chr9_53511287_53512369
Length = 1083
Score = 1251 bits (647), Expect = 0.0
Identities = 674/683 (98%), Gaps = 1/683 (0%)
Strand = Plus / Minus
Query: 1 catgaagacattgtcgtttccttttcagttggcctcctttgattgaagcagttttggttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1013 catgaagacattgtcgtttccttttcagttggcctcctttgattgaagcagttttgg-tt 955
Query: 61 ttttctttaaaacttgtgctccatctgtaaaatgaagacatttttatgatttctaagact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 ttttctttaaaacttgtgctccatctgtaaaatgaagacatttttatgatttctaagact 895
Query: 121 tcttccggttcaatcactcgtgaaatccgttacagattcttccatttgtgatcttaatca 180
|||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||
Sbjct: 894 tcttccggttcaatcactcgtgaaatcctttactgagtcttccatttgtgatcttaatca 835
Query: 181 gagatgatcttggagatatttcaaggtctggagggggagaaaaagcatttactaagagcg 240
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 834 gagatgatcttggcgatatttcaaggtccggagggggagaaaaagcatttactaagagcg 775
Query: 241 tttgttttaccctttaaagatagtaaaatcttcctctgtctatttacttaaaagtaattc 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 tttgctttaccctttaaagatagtaaaatcttcctctgtctatttacttaaaagtaattc 715
Query: 301 ctcaccctatcgacaggaaggtgaaggataattaatttgctagaatgtaaacctttgcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ctcaccctatcgacaggaaggtgaaggataattaatttgctagaatgtaaacctttgcta 655
Query: 361 attgagggttttgtaatggctttgagaagaatctaaatagcaattcattttatgtataca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 attgagggttttgtaatggctttgagaagaatctaaatagcaattcattttatgtataca 595
Query: 421 ttattaaaaccagccaataatgcaaggacagttagagaacatttatgatgagtcatactt 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ttattaaaaccacccaataatgcaaggacagttagagaacatttatgatgagtcatactt 535
Query: 481 tgcttagtttggctctttaccaatgatatattcatataaatacatatttcagtagctacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tgcttagtttggctctttaccaatgatatattcatataaatacatatttcagtagctacc 475
Query: 541 tacagtagttgcctttctagcatttagcagaatgcctcaccataaaacggtattcagaac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tacagtagttgcctttctagcatttagcagaatgcctcaccataaaacggtattcagaac 415
Query: 601 aactgatgttaagtcatcccatggcttctagaaaacgaagacatttgctttgaatcatgg 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 414 aactgatgttaagtcatcccatggcttctagaaaacgaagacatttgctttgaatcgtgg 355
Query: 661 atctccttcaagggtacttgaag 683
|||||||||||||||||||||||
Sbjct: 354 atctccttcaagggtacttgaag 332
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
