BAC Information

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BAC

Clone NameMSMg01-505O13
Chromosome9 (Build37)
Map Location 83,725,798 - 83,726,188
singlet/doubletsinglet
Overlap genenone
Upstream geneIrak1bp1, Phip, LOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4
Downstream geneTtk, EG546150, Bckdhb, EG666669
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505O13.T7 (MSMg01no505_o13.b1)MSMg01-505O13.TJ (MSMg01no505_o13.g1)
ACCAG580431AG580432
length757759
length of high quality
(start - end)
371 (325 - 695)394 (326 - 719)
definitionCHROMAT_FILE: MSMg01no505_o13.b1 PHD_FILE: MSMg01no505_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:55 2005CHROMAT_FILE: MSMg01no505_o13.g1 PHD_FILE: MSMg01no505_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCG
CGGAATTCTGGATTTCCCCTGCAGTGTGGAAACCACCATGTCCATTCTAG
ATGAGAATTATTACCTATTGGTCCCAAGAACCTATAGGGAAAAGAGAATA
TCCTTTTTCTCAATCACTGCAAGGTTCCTGGCTGAGACATTTGGAACAGA
AGACAGAAGAGCAAGAAAAACTTACATATTAACTTATATTTTTACATAGC
AAGGAGCCTTCCTGGGGAGAGGGGTTGTGGGTATTGCATGTTGGAGAGCA
TGCAAGTGGAGATCAGAGGACTGTCTTTTTTTGTTTTGTTCTTTTTGGTT
GTTTGAGACAGGGTTTCTCTGTGTAGCACTGGCTGTCCTGGAACTCACTC
TGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCC
GAGTACTGGGATTAAAGGTGTGCGCCACCACGCCCGGCTTAGAGGACAGC
CTTAAGTGTATAGTTCCTCAAAAGCCACACAAGGGGACTGACCACCACGC
CCAAGAATCTGCCTGGCCATGCCTTCTCGGTGTCTGGACTGTTGTAAGTA
CACCCTGCCAAGCCCAGCTTTTCAACATGGGCTCTGGGATTTGAACTCAG
GTCTTCATATTATCATGACAAGATCTTTACAAATTAAGCTATCTCTCCAG
TTCAGACTTGTATAGTTTTCTTCTGCAGTTACATCAAGAGTGAAGAGACA
TGGAGAC
NCCCAATGCAGTGGGAGGCCTGGNGGCCGCCTGTTCAACAAAGGTAGGTG
AACTATAGAATGTCAGAAAAAGTCCTAGAAGAAATGAGGGGAAACTGGAA
AAAAGTGGGCAGTCTGTTCAACTGTGATCAAAACTAAAAACCACCAACAA
CAGACTGAACGGCATGGAGAATCCCTCCACAATTTATGATTGTATTATAG
GAACATAATTAAGTTGTTTAAAACTGGTTATGAAGAGAAAGGTCTTCAAA
ATAGCTGAAGGATAAAAGACAGTTAGTTACACATAGGAAGACAACCATGA
AGACGACAACAGACGACTTGTCATAAATGATGTAAAATGCAAAACCTATT
TCAGAATACTCTAAAAGAAAAAAAAAAGCTGGCCCTGACAAATTTTACAT
CCACCAAAAGTATTATTCATTATGAAGGGAAAATAAAGATGAAAAGATAG
GAAGGATGGCTTATCACAAGTATCATAACTAGAATACAAGATAGTCAAGA
AAATTCTTCTGATAGAGTAATTCTGAATCTACAATGAGTATACACACCGG
AATAATGTATGTGATCTAAAACATATATCAATAGTGTTATTAAAAGCCTA
AAGAAAGCACTAAAAACAAGAGGAAAATGACAAACAAGTAAAAACCAACA
AGCAAACAAAAAAGTAATTGCTGCTGCTGAGCAAAAGAGTGGACATGAAG
AGCAGGTGATCAGTGCAAAGAGGGATTCAGAATGCAAGCAAAAACAAAGA
GGAAAACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_o13.g1 MSMg01no505_o13.g1 CHROMAT_FILE:
MSMg01no505_o13.g1 PHD_FILE: MSMg01no505_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:55 2005
         (394 letters)



>mm_chr9_83725598_83726388
          Length = 791

 Score =  716 bits (370), Expect = 0.0
 Identities = 387/394 (98%), Gaps = 3/394 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgatgtaaaatgcaaaacctatttcagaatactctaaaagaaaaaaaaaagctggccc 60
           ||||||||||||||||||||||||||||||||||| |||   ||||||||||||||||||
Sbjct: 591 aatgatgtaaaatgcaaaacctatttcagaatactttaa---aaaaaaaaaagctggccc 535

                                                                       
Query: 61  tgacaaattttacatccaccaaaagtattattcattatgaagggaaaataaagatgaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tgacaaattttacatccaccaaaagtattattcattatgaagggaaaataaagatgaaaa 475

                                                                       
Query: 121 gataggaaggatggcttatcacaagtatcataactagaatacaagatagtcaagaaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gataggaaggatggcttatcacaagtatcataactagaatacaagatagtcaagaaaatt 415

                                                                       
Query: 181 cttctgatagagtaattctgaatctacaatgagtatacacaccggaataatgtatgtgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cttctgatagagtaattctgaatctacaatgagtatacacaccggaataatgtatgtgat 355

                                                                       
Query: 241 ctaaaacatatatcaatagtgttattaaaagcctaaagaaagcactaaaaacaagaggaa 300
           | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ccaaaacatatatcaatactgttattaaaagcctaaagaaagcactaaaaacaagaggaa 295

                                                                       
Query: 301 aatgacaaacaagtaaaaaccaacaagcaaacaaaaaagtaattgctgctgctgagcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aatgacaaacaagtaaaaaccaacaagcaaacaaaaaagtaattgctgctgctgagcaaa 235

                                             
Query: 361 agagtggacatgaagagcaggtgatcagtgcaaa 394
           ||||||||| ||||||||||||||||||||||||
Sbjct: 234 agagtggacgtgaagagcaggtgatcagtgcaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 791
Length adjustment: 9
Effective length of query: 385
Effective length of database: 782
Effective search space:   301070
Effective search space used:   301070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)