Query= MSMg01no506_c03.b1 MSMg01no506_c03.b1 CHROMAT_FILE:
MSMg01no506_c03.b1 PHD_FILE: MSMg01no506_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:13 2005
(249 letters)
>mm_chr9_21275598_21276246
Length = 649
Score = 466 bits (241), Expect = e-136
Identities = 247/249 (99%)
Strand = Plus / Minus
Query: 1 ccagagtgctgggattacagcaagtaccgagcacgagtgtggctgcatacctgcttctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ccagagtgctgggattacagcaagtaccgagcacgagtgtggctgcatacctgcttctta 390
Query: 61 gtgttccagaaaacagctgtaatgtagaaccactgtgtccagaggagaaccacaaaagat 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 389 gtgttccagaaaacagctgtaatgtagaaacactgtgtccagaggagaaccacaaaagat 330
Query: 121 acacccctgatctgtggcccaccccagccctgtgtacgtacctcttctcaagggcagtag 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 329 acacccctgatctgtggcccaccccagccctgtgtacatacctcttctcaagggcagtag 270
Query: 181 cttgttttccaggacatccctggcgtctgtgccttcatccatcaagtctagcttggtgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cttgttttccaggacatccctggcgtctgtgccttcatccatcaagtctagcttggtgat 210
Query: 241 gacaccgat 249
|||||||||
Sbjct: 209 gacaccgat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no506_c03.g1 MSMg01no506_c03.g1 CHROMAT_FILE:
MSMg01no506_c03.g1 PHD_FILE: MSMg01no506_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:13 2005
(470 letters)
>mm_chr9_21109154_21110023
Length = 870
Score = 895 bits (463), Expect = 0.0
Identities = 469/471 (99%), Gaps = 2/471 (0%)
Strand = Plus / Plus
Query: 1 ccatttgtccccttctcatagagctcccactaacttaaggagaagatgaccctgaactcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatttgtccccttctcatagagctcccactaacttaaggagaagatgaccctgaactcc 260
Query: 61 taacccttctgcctcagcctccagagtgctgaagcgacaggcagggaccctcatgccggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taacccttctgcctcagcctccagagtgctgaagcgacaggcagggaccctcatgccggc 320
Query: 121 ctctgtgagatgtttaaatattattattaacctgtcccccgtaactccactagaatgtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctgtgagatgtttaaatattattattaacctgtcccccgtaactccactagaatgtca 380
Query: 181 aggccagaaatgggtttggtctgcagccggctcattaacaaagaaagcaaatgttaggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggccagaaatgggtttggtctgcagccggctcattaacaaagaaagcaaatgttaggtg 440
Query: 241 aactttgctgccgacatgcaatcattggagggaatgttaacacttatctcagaactggct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactttgctgccgacatgcaatcattggagggaatgttaacacttatctcagaactggct 500
Query: 301 gttgtctaggaggcctctggtggcttcctagcctattcccaggaagaggtccctccct-c 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 gttgtctaggaggcctctggtggcttcctagcctattcccaggaagaggtccctcccttc 560
Query: 360 cccgcaatcttacggccagtaagctcaaagagcactcggtcattgaggcccagccgcagc 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccc-caatcttacggccagtaagctcaaagagcactcggtcattgaggcccagccgcagc 619
Query: 420 tctggcatcccagacagaaacaccttcagcttgatggtgcccacaatctcg 470
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctggcatcccagacagaaacaccttcagcttgatggtgcccacaatctcg 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
