BAC Information

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BAC

Clone NameMSMg01-506F21
Chromosome9 (Build37)
Map Location 66,009,790 - 66,010,376
singlet/doubletsinglet
Overlap geneDapk2
Upstream genePunc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik
Downstream geneHerc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506F21.T7 (MSMg01no506_f21.b1)MSMg01-506F21.TJ (MSMg01no506_f21.g1)
ACCAG580780AG580781
length775789
length of high quality
(start - end)		587 (68 - 654)572 (76 - 647)
definitionCHROMAT_FILE: MSMg01no506_f21.b1 PHD_FILE: MSMg01no506_f21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:32 2005CHROMAT_FILE: MSMg01no506_f21.g1 PHD_FILE: MSMg01no506_f21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXGTTTCCATTGGCAAACGGAGCTGGCCTCTCACCAAAGGGAA
GCTCATAGCTCTCCTGGGACCATGCTTCGTGTTCCTGCCAACAAAATTTG
GGGTGGGGTGGGGTGGGTCTTTCTGCTTTTCTCTCTCTCTGTGGGGATTG
GTGCCCTTCCCTGAGAGTTGATGAATGGTTTGTTTGGAATGAGTTTCAGG
AGGCTGGCGGGGGATATTGAAAGTGAAGACAGGTTCAGCTTCTGATCCTG
GTTGAGTCAACCTTGCTAAGGGGATGCTGAAACATGTTCCCGAGAAGTGA
GTGTGGATGTCTCCATGGCCATGGGAAGCAGAGACACAGTGGCCTGGGCT
AGGACAGTAAAACCATCCTCCTCCTTACTTGTACAGTACCTTACATCTCC
CCCTGCTCCAGTGGCTCCCATGCTGGTGTGTGAAGTAGATGCTAGGGATT
ATAGAGGTGTCTCCATTTACAGACGAGGATGAGAAAGAGTGCCAGCCTGC
TGTGGGTTACAGGGATAATCCACATCAACCTAGTCTTGTGTCTAGGCTTG
CTCATGTTAGTATCTGTGCACACTCAGGCCCTCCCTGAGTACACAGCGGG
CATGAAGAAGGAGGATACATGAAGGGTCATGGGTGCCCACAGGCAGGTGA
CCCTGAAAGTGAGATCCGGGAGCCAGGCCAGCTCTGTCTAAAGGTCTCAA
GGGCCTGTGTGGCTTTGGCAGATAA

GATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTT
TAATGGGGTTATTTGAATTTCTGGAGTCCAGCTTCTTGAGCTTTTTGTAT
ATTAGATATTAGTCCCCTATCAGATTTAGGATTGGTAAAAATTCTTTCCC
AATCTGTTGGTGGCCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTACAG
AAGCTTTGTAATTTTATGAGGCCCCATTTGTCAATTCTTGGTCTTACAGC
ACCAGCCATTGCTGTTCTGTTTAGGAATTTTTCCCCTGTGTCCATATCTT
TGAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTT
ATGTGGAGGTCTTTGATCCACTTAAGATTTGAGCTTTGTACAAGGAGATA
AGAATGGATCAATTCGAATTCTTCTACATGATAACCACCAGTTAAGCCAG
CACCATTTGTTGAAAATGCTTTTTTCCACTGGATGGTTTTAGCTCCCTTG
TCAAAGATCAAGTGACCATAGGTTTGTGGATTTATTTCTGGGTCTTCAAT
TCTATTCCATTGATCTACCTATCTGTCACTGTACCAGTACCATGCAGTTT
TTATCACAATTGCTCTGTAGTACAGCTTAATGTCANGCATGGTAATTCCA
CCAGAGATCTTTTATTGTTGATAATAGTTTTTGCTATCCTANGTTTTTTA
TTATTCCAGATGATTTTGCAAATGCCCTTTCTATTTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_f21.b1 MSMg01no506_f21.b1 CHROMAT_FILE:
MSMg01no506_f21.b1 PHD_FILE: MSMg01no506_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:32 2005
         (587 letters)



>mm_chr9_66009590_66010576
          Length = 987

 Score = 1120 bits (579), Expect = 0.0
 Identities = 585/587 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcaaacggagctggcctctcaccaaagggaagctcatagctctcctgggaccatgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggcaaacggagctggcctctcaccaaagggaagctcatagctctcctgggaccatgctt 260

                                                                       
Query: 61  cgtgttcctgccaacaaaatttggggtggggtggggtgggtctttctgcttttctctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtgttcctgccaacaaaatttggggtggggtggggtgggtctttctgcttttctctctc 320

                                                                       
Query: 121 tctgtggggattggtgcccttccctgagagttgatgaatggtttgtttggaatgagtttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgtggggattggtgcccttccctgagagttgatgaatggtttgtttggaatgagtttc 380

                                                                       
Query: 181 aggaggctggcgggggatattgaaagtgaagacaggttcagcttctgatcctggttgagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaggctggcgggggatattgaaagtgaagacaggttcagcttctgatcctggttgagt 440

                                                                       
Query: 241 caaccttgctaaggggatgctgaaacatgttcccgagaagtgagtgtggatgtctccatg 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 caaccttgctaaggggatgctgaaacctgttcccgagaagtgagtgtggatgtctccatg 500

                                                                       
Query: 301 gccatgggaagcagagacacagtggcctgggctaggacagtaaaaccatcctcctcctta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccatgggaagcagagacacagtggcctgggctaggacagtaaaaccatcctcctcctta 560

                                                                       
Query: 361 cttgtacagtaccttacatctccccctgctccagtggctcccatgctggtgtgtgaagta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgtacagtaccttacatctccccctgctccagtggctcccatgctggtgtgtgaagta 620

                                                                       
Query: 421 gatgctagggattatagaggtgtctccatttacagacgaggatgagaaagagtgccagcc 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatgctagggattataggggtgtctccatttacagacgaggatgagaaagagtgccagcc 680

                                                                       
Query: 481 tgctgtgggttacagggataatccacatcaacctagtcttgtgtctaggcttgctcatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgctgtgggttacagggataatccacatcaacctagtcttgtgtctaggcttgctcatgt 740

                                                          
Query: 541 tagtatctgtgcacactcaggccctccctgagtacacagcgggcatg 587
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagtatctgtgcacactcaggccctccctgagtacacagcgggcatg 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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