Query= MSMg01no506_g20.b1 MSMg01no506_g20.b1 CHROMAT_FILE:
MSMg01no506_g20.b1 PHD_FILE: MSMg01no506_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:37 2005
(702 letters)
>mm_chr9_10042416_10043517
Length = 1102
Score = 1278 bits (661), Expect = 0.0
Identities = 688/697 (98%), Gaps = 1/697 (0%)
Strand = Plus / Minus
Query: 3 gaattcattgatgactcccctgtcagctgcaattcccactgggtttccaccctctcaatt 62
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 gaattcattgatgacaccactgtcagctgcaattcccactgggtttccaccctctcaatt 840
Query: 63 cagaggcaagcgtttaaacctctcagtgcagaggcagcgtttatattcagtatttttgca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 cagaggcaagcgtttaaacctctcagtgcagaggcagcgtttatattcagtatttttgca 780
Query: 123 agcttggcaaacacctctgtgggggtttgaatataaaaattatatttaagctgctgtgac 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 agcttggcaaacacctctgtgggggtttgaatataaaaattatatttaagctgctgtgac 720
Query: 183 cgtaatgttacctataaaagtcattttaagaacattgaaattttacacttttctggaaaa 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 719 cgtaatgttacctataaaagtcattttaagaacattgaaattttacacttttctgggaaa 660
Query: 243 aaaaaggttttctaaaaataataaaggatgtgtgagtaggcagaagtttttcctttcaag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 aaaaaggttttctaaaaataataaaggatgtgtgagtaggcagaagtttttcctttcaag 600
Query: 303 ttcaagtaaaattttccttagtaaactcttggttagaaaatgcattgatttgcttgagtt 362
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 599 ttcaagtaaaattttccttagtaaactcttggttagaaaatgcactgatttgcttgagtt 540
Query: 363 tgaaagcaaaatttgaagtgatatttgcttgtaggtattatatctgagttaattcataga 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tgaaagcaaaatttgaagtgatatttgcttgtaggtattatatctgagttaattcataga 480
Query: 423 gggcagaagtgagaggtgggggtagtgcaggatggaattgtgaaaatgctattgtattat 482
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 479 gggcagaagtgagagatgggggtagtgcaggatggaattgtgaaaatgctattgtgttat 420
Query: 483 acagataagtatgtctatggaaagtcagaactggccccacatagccagaaccatacatga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 acagataagtatgtctatggaaagtcagaactggccccacatagccagaaccatacatga 360
Query: 543 ggagcttcaagtggtaatcacagagcacactaaggttgtcccagagtgggagtcttcaag 602
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ggagcttcaagtggcaatcacagagcacactaaggttgtcccagagtgggagtcttcaag 300
Query: 603 gaggtccctctgttttctatctccactttctaagagtgactatgcacttttgccccgtga 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 299 gaggtccctctgttttctatctccactttctaagagtgactatgcacttttgccctgtga 240
Query: 663 acacttgctctaaagttgcaagcaaaataaaaaaaaa 699
||||||||||||||||||||||||||| |||||||||
Sbjct: 239 acacttgctctaaagttgcaagcaaaa-aaaaaaaaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space: 755664
Effective search space used: 755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no506_g20.g1 MSMg01no506_g20.g1 CHROMAT_FILE:
MSMg01no506_g20.g1 PHD_FILE: MSMg01no506_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:37 2005
(693 letters)
>mm_chr9_9873405_9874497
Length = 1093
Score = 1089 bits (563), Expect = 0.0
Identities = 644/693 (92%), Gaps = 36/693 (5%)
Strand = Plus / Plus
Query: 1 acttttgagagtctctccttctgtgcacattgatggtagtgttggatagagaagcataga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttttgagagtctctccttctgtgcacattgatggtagtgttggatagagaagcataga 260
Query: 61 aatagaattgctcaagctctcaatttacagttgaatcagcatcaatggataggcaagaga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 aatagaattgctcaagctctcaatttacagttgaatcagcatcaatggataggcaaaaga 320
Query: 121 atgacaagactgccttggaaggtaaggtcatcctcaatagagatgcttctaaactctgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgacaagactgccttggaaggtaaggtcatcctcaatagagatgcttctaaactctgct 380
Query: 181 ttctttgtgggctattgactcaagtctataattgcatgttgacattagtgagttatgaaa 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ttctttgtgggctattgactcaagtctataattgcatgttgacattactgagttatgaaa 440
Query: 241 ttcttacaaacacctgtggactcacttataaattgtaactcatatatatatatatatata 300
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 ttcttacaaacacctgtggactcacttataaattgtaa--catatatatatatatata-- 496
Query: 301 ttatatatattatatattttataatatatattttataatacatatatatatatattataa 360
||||||||| |||||||| ||||||||||
Sbjct: 497 -tatatatat-------------------------------atatatatgtatattataa 524
Query: 361 aactgtataatggggatatatatgcaaaacatgtacaaggctccttgaagtgtttagtgg 420
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 525 aactgtataatggggatatatatgcaaaacatgtacaagaccccttgaagtgtttagtgg 584
Query: 421 aaagtcataggttgtaagattatgactgttcacttacagaagacccaagggaatgtggat 480
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 585 aaagtcataggttgtaagattatgactgttcgcttacagaagacccaagggaatgtggat 644
Query: 481 ggtcttactgaggctagctcttccaatttaagaagtaatctgaggatatgagatagagac 540
|| ||||||||||||||||||||||| | |||||| |||||||||||||||||||| |||
Sbjct: 645 ggccttactgaggctagctcttccaactaaagaagaaatctgaggatatgagatagcgac 704
Query: 541 tgaacagagcagaagctccttgagttaacagataagaaaattaactgtacaaaggaaaca 600
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 705 tgaacagagcagaagttccttgagttaaaagataagaaaattaactgtacaaaggaaaca 764
Query: 601 aagccagaaaataggaaaaggatttgcaagatgctaggaggaggacatgcacacctgtat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 aagccagaaaataggaaaaggatttgcaagatgctaggaggaggacatgcacacctgtat 824
Query: 661 ctgtgtacatgccctctgccttggtatctacca 693
|||||||||||||||||||||||||||||||||
Sbjct: 825 ctgtgtacatgccctctgccttggtatctacca 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
