Query= MSMg01no506_k21.b1 MSMg01no506_k21.b1 CHROMAT_FILE:
MSMg01no506_k21.b1 PHD_FILE: MSMg01no506_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:58 2005
(612 letters)
>mm_chr9_3086562_3087572
Length = 1011
Score = 1149 bits (594), Expect = 0.0
Identities = 606/610 (99%), Gaps = 1/610 (0%)
Strand = Plus / Plus
Query: 3 ggaattcagacctgattccgtgaaccaaacttcaagaacggagctgccaaaagtgcttgg 62
||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaatccagacctgaatctgtgaaccaaacttcaagaacggagctgccaaaagtgcttgg 262
Query: 63 cacccagcccttcctacacatcattctggtcatttcccagtcctgtcatgaggctaaatg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cacccagcccttcctacacatcattctggtcatttcccagtcctgtcatgaggctaaatg 322
Query: 123 aagcacaagacttcatcataaagaatttggacaaattgtcccacagaccatattataaat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aagcacaagacttcatcataaagaatttggacaaattgtcccacagaccatattataaat 382
Query: 183 gctggccactggtttgatttttaatatatatgaaatttccccctgcttgcgataaataga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gctggccactggtttgatttttaatatatatgaaatttccccctgcttgcgataaataga 442
Query: 243 tagatccctttgtaatataaaagagaaaaagagtcttgtatgaatggtgaatgcctttac 302
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 443 tagatccctttgtaatataaaagagaaaaagagtcttg-atgaatggtgaatgcctttac 501
Query: 303 ccaagcagctgaatctgcccccctggtacctaaacttcacattccagaataaaatcactc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ccaagcagctgaatctgcccccctggtacctaaacttcacattccagaataaaatcactc 561
Query: 363 aatagtgtttactttaagtccagcatctctctggttactgaggaaacaacaatgagccag 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aatagtgtttactttaagtccagcatctctctggttactgaggaaacaacaatgagccag 621
Query: 423 actaagtctcagttcccatggggctgacattctattgactgggagatggctgagaccatg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 actaagtctcagttcccatggggctgacattctattgactgggagatggctgagaccatg 681
Query: 483 atacacagtcaaatgtttactccaaatgcctagaagaaactaaaataggaacgaagaatg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 atacacagtcaaatgtttactccaaatgcctagaagaaactaaaataggaacgaagaatg 741
Query: 543 gaagtggccccggttttcaatatggtggttagggaacatctccttgaagatgtggtctga 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gaagtggccccggttttcaatatggtggttagggaacatctccttgaagatgtggtctga 801
Query: 603 aagagacaaa 612
||||||||||
Sbjct: 802 aagagacaaa 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1011
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1001
Effective search space: 602602
Effective search space used: 602602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_k21.g1 MSMg01no506_k21.g1 CHROMAT_FILE:
MSMg01no506_k21.g1 PHD_FILE: MSMg01no506_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:58 2005
(674 letters)
>mm_chr9_3230428_3231501
Length = 1074
Score = 1261 bits (652), Expect = 0.0
Identities = 668/674 (99%), Gaps = 2/674 (0%)
Strand = Plus / Minus
Query: 1 ttgttttgttttgttttgttttgttttcgtttttgtttttttttgtttttgtttttggtt 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 927 ttgttttgttttgttttgttttgttttcgtttttg--tttttttgtttttgtttttggtt 870
Query: 61 acacatttgaaatttattgcagaaagttgggacttaataacaattatacttttgaaaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 acacatttgaaatttattgcagaaagttgggacttaataacaattatacttttgaaaaat 810
Query: 121 ctgttcagatgtcagtcacatttcattttgtaatcaatggctgattatcggcaataatag 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 809 ctgttcagatgtcagtcacatttcattttgtaatcaatggctgattatcagcaataatag 750
Query: 181 agtcagtgagtagccttcaaaaataaaatgttaataaactcagcagttcttgatatgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 agtcagtgagtagccttcaaaaataaaatgttaataaactcagcagttcttgatatgctt 690
Query: 241 tagagtcaaatataatagactgtgccttgatacctctgccaactctttcccagacacttt 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tagagtcaaatagaatagactgtgccttgatacctctgccaactctttcccagacacttt 630
Query: 301 cttacttttgaagctcaatcgttgctgagagagaaacattcttcatcgggtactatactc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 cttacttttgaagctcaatcgttgctgagagagaaacattcttcatcgggtactatactc 570
Query: 361 accaaagaaagcaaatttgttctcaaaattctccttttgaaaattgggaactgggtaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 accaaagaaagcaaatttgttctcaaaattctccttttgaaaattgggaactgggtaaat 510
Query: 421 tcaaaactgagcttgtggctaatgtactgaggtctcatcacttcgtaggtacataataga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tcaaaactgagcttgtggctaatgtactgaggtctcatcacttcgtaggtacataataga 450
Query: 481 atctctctgccttccacatcagacatcaatctgctcttcagtagtctccatactatctct 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atctctctgtcttccacatcagacatcaatctgctcttcagtagtctccatactatctct 390
Query: 541 caggctgaacccctctattttcatggcataagaaaggtagaaatattttatatctctggg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 caggctgaacccctctattttcatggcataagaaaggtagaaatattttatatctctggg 330
Query: 601 ggtcattaaaaattctatagcccacaagaagaaaggaatttgtcttttatctctgcattg 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agtcattaaaaattctatagcccacaagaagaaaggaatttgtcttttatctctgcattg 270
Query: 661 ccagaatctgtcat 674
||||||||||||||
Sbjct: 269 ccagaatctgtcat 256
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
