BAC Information

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BAC

Clone NameMSMg01-506L22
Chromosome9 (Build37)
Map Location 122,690,642 - 122,865,944
singlet/doubletdoublet
Overlap geneLOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15
Upstream geneKbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218
Downstream geneTmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506L22.T7 (MSMg01no506_l22.b1)MSMg01-506L22.TJ (MSMg01no506_l22.g1)
ACCAG581063AG581064
length769779
length of high quality
(start - end)		645 (44 - 688)587 (75 - 661)
definitionCHROMAT_FILE: MSMg01no506_l22.b1 PHD_FILE: MSMg01no506_l22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:03 2005CHROMAT_FILE: MSMg01no506_l22.g1 PHD_FILE: MSMg01no506_l22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,865,584 - 122,865,944)(122,690,642 - 122,691,228)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTAAATTTATACCATTATTAAACTCTTTTAATAACAGTTATTAAGTC
CTTTCTAATGTCAAAACTGCAATGACAACTCTACCAGTCTTTAGTGCCAT
GAGATATTTGCTTCTGAGATAGTAAGCAGGCATTCTGCAACTTAGAACAC
TCCAAGAGGTTGTAAAACCATTAACCAAAGGTCATTAGAAAGGAACTAAC
AATTTACCATATAAAATATTGACTGGGTTTATCTATACAAAGTTCACTAA
TACCTTGGTCACATAAATTAGGATTTTTAAACTCTCCATGAACCTGCAAA
GCTTGTGACAGGTGATGAATGTTTAGCCAGATAATTACTCCTAATGGATA
TACATATAAGCAGTCTCTGTTGTAAATTTATTTGATTTATGATATGAATT
TATGTGTAAACTTGTGATGTTTTACCATGTGATCATGTATTCTGATAGAT
GTATAAGTACTGAGGACAAAGAAAAGAAAGCTCACACTCTCCCTATCCCT
CCCTTCTTGCATTTTCCTCAGCCTGCTTTTCTTAGATTCCGCTTATGCCC
TTTTTTCTTAGACCCACATCCTCCTTTTTGTTACAAGCCCTTTCCCCCTT
TTCTTAGAGAGCTTGCATAGGAATTGCTTTTTGTTTTGTTTTTTCGAGAC
AGGGTTTCTCTGTGTAGCCCTGGCTGTCCTAGAACTCACTCTGTAGACCA
GGCTGGCCTTGAACTCATA

GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAAATGATCTTTTTCTCCTGAAATA
GTTCAGAAGCACTCTCCGCTGTTTTAAGTTTCCCTTAAACAAATCCTTCT
AAGTATTCAAATGACTCCTTTCTTATTATAGATTATCTTCATCTCTATTT
CTTAAATATAGCTAAAAGAATTCTTTCTCTGAAATACTTAAAGTCACAAC
AAAATAAATCAGTATATAATTAGAAAGTTGTAACTAAAATAAAGTAGTTA
GGAATTGGTTTAAAATTTGGCATTAAGCAAAATGAGAAATAAAATTTTAA
TGCTACCTAAAACACATTAAAAATAAATGTGTACGTATGTATGTGCATAT
ATGGAAACTAGAGGTCAGCATCACTTTCCAGCTTGCTTAGGCCACTGCCC
ACTCCTGTCTCTACCTAACTAGCACTGGGATTGCAGGCCTATGTTTCTGT
GCCTCGCTTATTACAGGGGTGCTGAAGATCCAAATTTAGGTCCTCCCGCT
TGTATAGCAAGCATTTTACCAGCTGAGTTACATCTTCAACTGCCAAGTTT
AACTTTTCTTGAATGCTTCAAAATACCTGATAAGCACCAACAAGCACTAG
ATGAAAACAGGTGCGGTGGCAAATGTCTGTACTTCTAGTCCTCCAAAGGT
GGAGGCAGGGGAATCAAAAGTAACGTTTGAGGCCAGGCTAGGCAACATGA
GCTCCTGGCCTTAAAAAAAAAAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_l22.b1 MSMg01no506_l22.b1 CHROMAT_FILE:
MSMg01no506_l22.b1 PHD_FILE: MSMg01no506_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:03 2005
         (645 letters)



>mm_chr9_122864900_122865944
          Length = 1045

 Score =  667 bits (345), Expect = 0.0
 Identities = 357/361 (98%)
 Strand = Plus / Minus

                                                                        
Query: 285  taaactctccatgaacctgcaaagcttgtgacaggtgatgaatgtttagccagataatta 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 taaactctccatgaacctgcaaagcttgtgacaggtgatgaatgtttagccagataatta 986

                                                                        
Query: 345  ctcctaatggatatacatataagcagtctctgttgtaaatttatttgatttatgatatga 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985  ctcctaatggatatacatataagcagtctctgttgtaaatttatttgatttatgatatga 926

                                                                        
Query: 405  atttatgtgtaaacttgtgatgttttaccatgtgatcatgtattctgatagatgtataag 464
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 925  atttatgtgtaaacttgtgatgtttaaccatgtgatcatgtattctgatagatgtataag 866

                                                                        
Query: 465  tactgaggacaaagaaaagaaagctcacactctccctatccctcccttcttgcattttcc 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865  tactgaggacaaagaaaagaaagctcacactctccctatccctcccttcttgcattttcc 806

                                                                        
Query: 525  tcagcctgcttttcttagattccgcttatgcccttttttcttagacccacatcctccttt 584
            ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 805  tcaacctgcttttcttagattctgcttatgcccttttttcttagacccacatcctccttt 746

                                                                        
Query: 585  ttgttacaagccctttcccccttttcttagagagcttgcataggaattgctttttgtttt 644
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745  ttgttataagccctttcccccttttcttagagagcttgcataggaattgctttttgtttt 686

             
Query: 645  g 645
            |
Sbjct: 685  g 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no506_l22.g1 MSMg01no506_l22.g1 CHROMAT_FILE:
MSMg01no506_l22.g1 PHD_FILE: MSMg01no506_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:03 2005
         (587 letters)



>mm_chr9_122690442_122691428
          Length = 987

 Score = 1112 bits (575), Expect = 0.0
 Identities = 584/587 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaatgatctttttctcctgaaatagttcagaagcactctccgctgttttaagtttccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaatgatctttttctcctgaaatagttcagaagcactctccgctgttttaagtttccc 260

                                                                       
Query: 61  ttaaacaaatccttctaagtattcaaatgactcctttcttattatagattatcttcatct 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ttaaacaaatccttctaagtattcaaatgactcctttcttattataaattatcttcatct 320

                                                                       
Query: 121 ctatttcttaaatatagctaaaagaattctttctctgaaatacttaaagtcacaacaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatttcttaaatatagctaaaagaattctttctctgaaatacttaaagtcacaacaaaa 380

                                                                       
Query: 181 taaatcagtatataattagaaagttgtaactaaaataaagtagttaggaattggtttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaatcagtatataattagaaagttgtaactaaaataaagtagttaggaattggtttaaa 440

                                                                       
Query: 241 atttggcattaagcaaaatgagaaataaaattttaatgctacctaaaacacattaaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttggcattaagcaaaatgagaaataaaattttaatgctacctaaaacacattaaaaat 500

                                                                       
Query: 301 aaatgtgtacgtatgtatgtgcatatatggaaactagaggtcagcatcactttccagctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatgtgtacgtatgtatgtgcatatatggaaactagaggtcagcatcactttccagctt 560

                                                                       
Query: 361 gcttaggccactgcccactcctgtctctacctaactagcactgggattgcaggcctatgt 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 gcttaggccactgcccactcctgtctctacctcactagcactgggattgcaggcctatgt 620

                                                                       
Query: 421 ttctgtgcctcgcttattacaggggtgctgaagatccaaatttaggtcctcccgcttgta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctgtgcctcgcttattacaggggtgctgaagatccaaatttaggtcctcccgcttgta 680

                                                                       
Query: 481 tagcaagcattttaccagctgagttacatcttcaactgccaagtttaacttttcttgaat 540
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 tagcaagcattttaccagctgagttacatcttcaattgccaagtttaacttttcttgaat 740

                                                          
Query: 541 gcttcaaaatacctgataagcaccaacaagcactagatgaaaacagg 587
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcttcaaaatacctgataagcaccaacaagcactagatgaaaacagg 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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