Query= MSMg01no506_m02.b1 MSMg01no506_m02.b1 CHROMAT_FILE:
MSMg01no506_m02.b1 PHD_FILE: MSMg01no506_m02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:04 2005
(261 letters)
>mm_chr9_58487850_58488511
Length = 662
Score = 468 bits (242), Expect = e-136
Identities = 257/262 (98%), Gaps = 1/262 (0%)
Strand = Plus / Plus
Query: 1 agagcagtcagtgctcttaactgccgagccatctctccagctcaaactttcattttctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagcagtcagtgctcttaactgccgagccatctctccagctcaaactttcattttctta 260
Query: 61 aaaaaatacttgccatttaacatgatgcatagttattgaaggtgtttgaagaagaaaact 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaatacttgccatttaacatgatgcatagttattgaaggtgtttgaagaagaaaact 320
Query: 121 tggcctacataagtggcaatgcttctgtatacatgtttcctgaggaacatgctttggcag 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 tggcctacataagtggcaatgcttctgtatacatgtttcctgaggaacatgcttgggcaa 380
Query: 181 ttaggacaattgagtttgtgtgctttttt-cagtaagttctacttacgatattaaccctg 239
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 381 ttaggacaattgagtttgtgtgctttttttcagtaagttatacttacgatattaaccctg 440
Query: 240 atattccttgatgctttggtaa 261
||||||||||||||||||||||
Sbjct: 441 atattccttgatgctttggtaa 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 662
Length adjustment: 9
Effective length of query: 252
Effective length of database: 653
Effective search space: 164556
Effective search space used: 164556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no506_m02.g1 MSMg01no506_m02.g1 CHROMAT_FILE:
MSMg01no506_m02.g1 PHD_FILE: MSMg01no506_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:04 2005
(510 letters)
>mm_chr9_58682491_58683400
Length = 910
Score = 700 bits (362), Expect = 0.0
Identities = 380/386 (98%)
Strand = Plus / Minus
Query: 1 actagagaagagggcctgtccctcggggcagggcatggggcagaggggtcagaatttgac 60
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 386 actagagaagagggcctgtcccttggggcacggcatggggcagaggggtcagaatttgac 327
Query: 61 tagggccctaggaagctaatgcaggattgaggcaaggaggagctaccccagcagatgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tagggccctaggaagctaatgcaggattgaggcaaggaggagctaccccagcagatgttt 267
Query: 121 caggccagaggtccctgaggaggcccaccacatgggcccccagagtgagtagcatgaggc 180
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 266 caggccagaggtccctcaggaggcccgccacatgggcccccagagtgagtagcatgaggc 207
Query: 181 agtaggggggtgtgcccgctagtattctgtcaacatcactcaagccgaggtcatctggga 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 agtaggagggtgtgcccgctagtattctgtcaacatcactcaagccgaggtcatctggga 147
Query: 241 agagagaactcccatcagattgcctgtaggcaaatctatggggcactttcttgattagtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 agagagaactcccatcagattgcctgtaggcaaatctatggggcactttcttgattagtg 87
Query: 301 attgatacgggaggacccagctcactgtgggtgggactacccctaagacaatggtcctag 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 86 attgatacgggaggacccagctcactgtgggtaggactacccctaagacaatggtcctag 27
Query: 361 gttacagtaaagaaaacagaccatac 386
||||||||||||||||||||||||||
Sbjct: 26 gttacagtaaagaaaacagaccatac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
