BAC Information

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BAC

Clone NameMSMg01-507G13
Chromosome9 (Build37)
Map Location 120,771,180 - 120,940,765
singlet/doubletdoublet
Overlap geneCtnnb1
Upstream geneLOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010
Downstream geneUlk4, Trak1, Cck, Lyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507G13.T7 (MSMg01no507_g13.b1)MSMg01-507G13.TJ (MSMg01no507_g13.g1)
ACCAG581566AG581567
length759762
length of high quality
(start - end)		329 (335 - 663)274 (75 - 348)
definitionCHROMAT_FILE: MSMg01no507_g13.b1 PHD_FILE: MSMg01no507_g13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:56 2005CHROMAT_FILE: MSMg01no507_g13.g1 PHD_FILE: MSMg01no507_g13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,771,180 - 120,771,508)(120,940,497 - 120,940,765)
sequence
NACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATAAACCGCG
GAANNCAGGAGGCTGTTGCAAGAAGAGCTGGACAAGTTTAAAGCCAGCCT
CGGCTACAGAGTGATTCTTTCTCCCCTTCTCCCCCCTCCCCTTATATAAG
GTAGGAAGGTCCCTCAGCTCCTTCTGTCCACACAGACCTATGGGCAGGAA
TGGGGGGAGGAATGGAGGGAGATAGTGTGGCCTGGTTTTGTCCACTGGAC
TTAGGAATGCTTTGACCCAGTGCTGGAGCATCTGCTCTGCTAGCGGAGGA
GGCTGTCTGAGCCACCGCACACTGTTNGTTCCTAGTGTGGAAACGAATCA
CTAATGCGGATGTTTGCTTGAGGCTGAATTTGGAAGCGAGGTTGCTATGT
CACCGATGCTGCCTCAGGTCCCCCACAGCCTGACTGAAGCAGGCATCGCC
GTCCGCTGCCAAGTAATGTGGAGCTACAGGCCATCAAGGAGGGGCCTGCC
AGGGATCCCCCGCAGGAAGGCCAGTGCCAGGGGCTCACTCAGGGATGAGA
GACAGGCAGCAGTCAGTCAGAGCTGGGATGCTCCCCAGATCTTGCTCCAG
GGCCCCTGAGCCTAAGAGCTAACGGAAGCATCAGGTTTCATAAATTGTCA
GGATAAAAAGCCAAGTGAGGCGTCTTGGCCATTCCTATCTTGTCTGCTCT
GGAGTGGAGCCTGGGTCTCCCTGAGATATTAGAACATTAAACCTGTCACA
GTAAATACC

NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACTCTGTAACCCCAGCTTGCTTCAGA
GTCACTATGTAGCCTAGGCTGGTCCCTGACTTCTGTGATCCCCCTGCCTC
TGTGTCCTGAGCAGAAGCTATAGCTTAACATGTAGCCATCACTCATAGTG
TGTGATGTAATTTTTACCCCAGAGTGGAGAGCTGGTTATTTCCTGGAGTG
TTCTTGAGCACAGTCTGCTTTACCCAGGCAGGACTGTCACCTGTAGTCTG
TTACAAGTGAGGTTTCCTCAGATAGTGGGAGGGAGGGAGGGAGGNANNNN
NNNNNNNNNNNTTTTTTTTNNTTTTTTTTNTTTTTTTTTTTTTTTTTTNT
TTTTTTTTTTTTTTTTTCCCCCTTTTTTTTTTTTTTTTTNTTTTTTNTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTN
TTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTNNTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTNTTNTTTTTTT
TTTTTTTTTTTTTTTCNNNTTTTTTTTTTTTTTTTNTNTTTTTTTTTTNN
TTTTTTTTTTTTTTTTTNTTTTTTNTTTTTTTTTTTTNTTTTNTNTTTTT
TTTTCTCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_g13.b1 MSMg01no507_g13.b1 CHROMAT_FILE:
MSMg01no507_g13.b1 PHD_FILE: MSMg01no507_g13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:56 2005
         (329 letters)



>mm_chr9_120770980_120771708
          Length = 729

 Score =  636 bits (329), Expect = 0.0
 Identities = 329/329 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgtggaaacgaatcactaatgcggatgtttgcttgaggctgaatttggaagcgaggttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtggaaacgaatcactaatgcggatgtttgcttgaggctgaatttggaagcgaggttg 260

                                                                       
Query: 61  ctatgtcaccgatgctgcctcaggtcccccacagcctgactgaagcaggcatcgccgtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatgtcaccgatgctgcctcaggtcccccacagcctgactgaagcaggcatcgccgtcc 320

                                                                       
Query: 121 gctgccaagtaatgtggagctacaggccatcaaggaggggcctgccagggatcccccgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgccaagtaatgtggagctacaggccatcaaggaggggcctgccagggatcccccgca 380

                                                                       
Query: 181 ggaaggccagtgccaggggctcactcagggatgagagacaggcagcagtcagtcagagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaggccagtgccaggggctcactcagggatgagagacaggcagcagtcagtcagagct 440

                                                                       
Query: 241 gggatgctccccagatcttgctccagggcccctgagcctaagagctaacggaagcatcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggatgctccccagatcttgctccagggcccctgagcctaagagctaacggaagcatcag 500

                                        
Query: 301 gtttcataaattgtcaggataaaaagcca 329
           |||||||||||||||||||||||||||||
Sbjct: 501 gtttcataaattgtcaggataaaaagcca 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no507_g13.g1 MSMg01no507_g13.g1 CHROMAT_FILE:
MSMg01no507_g13.g1 PHD_FILE: MSMg01no507_g13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:57 2005
         (274 letters)



>mm_chr9_120940179_120940852
          Length = 674

 Score =  505 bits (261), Expect = e-147
 Identities = 267/269 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtaaccccagcttgcttcagagtcactatgtagcctaggctggtccctgacttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 actctgtaaccccagcttgcttcagagtcactatgtagcctaggctggtccctgacttct 528

                                                                       
Query: 61  gtgatccccctgcctctgtgtcctgagcagaagctatagcttaacatgtagccatcactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gtgatccccctgcctctgtgtcctgagcagaagctatagcttaacatgtagccatcactc 468

                                                                       
Query: 121 atagtgtgtgatgtaatttttaccccagagtggagagctggttatttcctggagtgttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 atagtgtgtgatgtaatttttaccccagagtggagagctggttatttcctggagtgttct 408

                                                                       
Query: 181 tgagcacagtctgctttacccaggcaggactgtcacctgtagtctgttacaagtgaggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tgagcacagtctgctttacccaggcaggactgtcacctgtagtctgttacaagtgaggtt 348

                                        
Query: 241 tcctcagatagtgggagggagggagggag 269
           |||||||| || |||||||||||||||||
Sbjct: 347 tcctcagagagagggagggagggagggag 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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