Query= MSMg01no507_m03.b1 MSMg01no507_m03.b1 CHROMAT_FILE:
MSMg01no507_m03.b1 PHD_FILE: MSMg01no507_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:24 2005
(643 letters)
>mm_chr9_66666220_66667262
Length = 1043
Score = 1135 bits (587), Expect = 0.0
Identities = 619/637 (97%), Gaps = 12/637 (1%)
Strand = Plus / Plus
Query: 4 ggaattcagcatataatcctaaactctcccaaggaagtcagcatataattaatcctaaag 63
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagcatataattttaaactctcccaaggaagtcagcatataattaatcctaaag 263
Query: 64 agcctgaattcatactcaaataaataatctagtgcctgaggaagaaaaacttaaaattga 123
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 264 agcctgaatttatactcaaataaataatctagtgtctgaggaagaaaaacttaaaattga 323
Query: 124 taaaataatgagaaaactacaggttctacatggaccttaccttggctaagttataatgcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taaaataatgagaaaactacaggttctacatggaccttaccttggctaagttataatgcc 383
Query: 184 agtgtaggttactgcatttaaaggcacagcctatgatgctggtgaaggctagcaaaccca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtgtaggttactgcatttaaaggcacagcctatgatgctggtgaaggctagcaaaccca 443
Query: 244 ctagcaaacccatccacagacagaacagccctggagtctgtgacatcagtacataaaaag 303
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ------------tccacagacagaacagccctggagtctgtgacatcagtacataaaaag 491
Query: 304 acaagggctacgctggttaccacattcagatatttacttgctcagctgaagttggcttag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 acaagggctacgctggttaccacattcagatatttacttgctcagctgaagttggcttag 551
Query: 364 aagaccaacactgaacagcttttgggtgttttctcgaactccccattggaccccagtgac 423
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aagaccaacactaaacagcttttgggtgttttctcgaactccccattggaccccagtgac 611
Query: 424 tctcagctgtcctgcacatccaggataatcaagtctggagaagcccagaagcatcagtcc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tctcagctgtcctgcacatccaggataatcaagtctggagaagcccagaagcatcagtcc 671
Query: 484 ttgtttccccagatacttcaaatgtgcagccaggctgcaggctacactgcagctcttcca 543
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ttgtttccccagatgcttcaaatgtgcagccaggctgcaggctacactgcagctcttcca 731
Query: 544 gaggctgctgcatgaaagcacaggacagttccaggctggacagttctgtggcttccaagt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 gaggctgctgcatgaaagcacaggacagttccaggctggacagttctgtggcttccaagt 791
Query: 604 tccaagagacaggggtctttttagaacagggcccagt 640
|||||||||||||||||||||||||||||||||||||
Sbjct: 792 tccaagagacaggggtctttttagaacagggcccagt 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_m03.g1 MSMg01no507_m03.g1 CHROMAT_FILE:
MSMg01no507_m03.g1 PHD_FILE: MSMg01no507_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:25 2005
(636 letters)
>mm_chr9_66833598_66834633
Length = 1036
Score = 1141 bits (590), Expect = 0.0
Identities = 623/636 (97%), Gaps = 4/636 (0%)
Strand = Plus / Minus
Query: 1 tctgcaaatactctttgggcttagagtttcctcacattcctgtgaagcctaatccccaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 tctgcaaatactctttgggcttagagtttcctcacattcctgtgaagcctaatccccaag 887
Query: 61 gtgaccgtatatagaaagagatctctaaggagataattaagatcaaatagggttgagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 gtgaccgtatatagaaagagatctctaaggagataattaagatcaaatagggttgagagg 827
Query: 121 tcaaaggcctgactgtagtaggcttggaacccttaaaggaaagtacatagagttaaccgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tcaaaggcctgactgtagtaggcttggaacccttaaaggaaagtacatagagttaaccgg 767
Query: 181 tggtggcacacgcctttgaacccagcagttaggaggcagaggcaggcagatctctgagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tggtggcacacgcctttgaacccagcagttaggaggcagaggcaggcagatctctgagtt 707
Query: 241 tggttcagcctggtctatacagagtgagttccaggacagccagggcttacacagagaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 706 tggttcagcctggtctatacagagtgagttccaggacagccagggcttatacagagaaac 647
Query: 301 cctgtctctagagtccctgaggaagctaagctcccgccactgcctggccgctgtctttca 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 646 cctgtctctagagtccctgaggaagctaagctcccgccactgcctggccactgtctttca 587
Query: 361 ctgtctccttcctcctggtaactcaaattcctcctagagttttcctggaatcaactaaat 420
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ctgtctccttcctcttcgcaactcaaattcctcctagagttttcctggaatcaactaaat 527
Query: 421 ggcagccactaaccgaggagcgattctcaacctgtgggtcgcgatccccttggggtcaca 480
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 526 ggcagccactaaccgaggagcgattctcaacctgtaggtcttgatccccttggggtcaca 467
Query: 481 tatcagatgtcctgcatatcatatatatatattcatataacatatatatggcactattca 540
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 466 tatcagatgtcctgcatatc----atatatattcatataacatatatatgtcactattca 411
Query: 541 taacagtagaaaattgcagttataaagcagtaatgaaacaattttgtggttgggggtcac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 taacagtagaaaattgcagttataaagcagtaatgaaacaattttgtggttgggggtcac 351
Query: 601 cacaacacaaggaactatattaaagggtcacagctc 636
||||||||||||||||||||||||||||||||||||
Sbjct: 350 cacaacacaaggaactatattaaagggtcacagctc 315
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
