BAC Information

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BAC

Clone NameMSMg01-507O01
Chromosome9 (Build37)
Map Location 119,105,330 - 119,105,924
singlet/doubletsinglet
Overlap geneSlc22a13
Upstream geneEomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14
Downstream gene9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507O01.T7 (MSMg01no507_o01.b1)MSMg01-507O01.TJ (MSMg01no507_o01.g1)
ACCAG581921AG581922
length768773
length of high quality
(start - end)
253 (327 - 579)621 (75 - 695)
definitionCHROMAT_FILE: MSMg01no507_o01.b1 PHD_FILE: MSMg01no507_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:34 2005CHROMAT_FILE: MSMg01no507_o01.g1 PHD_FILE: MSMg01no507_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:34 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AAAATTTGCGGCGCTAAACGAANATCATATTTCCCACCCCGCGGAANCAG
NCAGANATGCCAGCCACTGGAGAGCNGGCNCACNGGGNAAAGGAGCGCTT
CCTGGTCTTGCATATGACCTGAGTTCAGTTCCCAGCATCTCTGTGAGGCT
GCTCACATGCATTCATCTGACCTCCACAGGCCTCCACACATGCCACACCC
ATGCACACAAATCAAAATGAATCACCTTTAAAAGCATCAAACACAGGATT
TACATTTACAGTGAAAAAAAGGGTCAAACATGGCATGTAACAGCCCAGCC
ATCCTTCCATATGACTTTTTTTTTGTCCAGCTGCAAGGAGAAAACGACAG
NCAAATCAATAATAAAAAGCTATCTTGTCTTCCGAAAATGAACAGCAGAC
AACACAGGCGAGTCATGCCCAGGTTCTGGCTGGTGGGATAAAGCTGGAAA
ATGAACGTTGTTATAAATATGGAAAAGTTATAAATTTAGCCTTGCTTGTA
GATGACATCACTGTTTACATAGATACCCAAAAGAGTATAAAAATGGATTC
CCATGGTTGAAAGACTCTGGTCTGCTTGCTCCTATGAGCTTCTGGATAGG
TGTTTGAATGGAAGGAAAAAATATATATAAAGAATTGAAACACTTAAGGA
AGAAGCCCTTGTAAGACAGCTTGCCCAGCAAGTGCCAGGCCTTGGTGTGT
ATAGCGATGGGGGAACATCGAGAGCCCACTGTAGTTCGTATCCTCCATTC
CAAGCTGCTCTCTCCATA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAGGCAAGTTGTGATATCGGATAGG
ATTCAAAGGTTGCTATATTTCTGTTTAGATTTTTATTTTATGTATGTGAG
TACACTGCGGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATT
ACAGATGGTTGTGAGCCATCATGTGGTTGCTAAAAATTGAACTCAGGACC
TCTGGAAGAGCAGCCAGTGCTCTTAACTGCTGAGACAACTCTCCGGGCCC
TTCTGTTTAGATTTTTCACTACCATGTGCCCACTGTTTGGCTGTGAGGCA
CCTTGATAGACAGTGAAACAGGGGCGCTCTAGAGAGTGAAGGCAACCCTG
GACACTGCACCTGCTGGTAACATGAGTATGTTTCTTCCTTTCAGTTTGAC
CTGGTGTGTGATCGAAAGAACCTGAAGAAGACCTCCCAGTCGGTGTTCAT
GGCTGGTCTCCTTGTTGGGGCCCTGGTCTTTGGGCCTGTCTGTGACTGGT
ATGTGCTGCTGGTCCGGTGTGCTTTTAGGCTTCTGGTGCTTGCTCAGTTA
CCCCCTCCCCACCCCCCAGAGCTATACCAGTAGCCATCAAGATGAGTCCT
ATTGCCTACCTACCAGGGAAAACCCTATCTCCCCACTCTGACAGAGGGNC
AGAATAGGCTTGCCGGGGGCTCTCTTGATTCAGTCCTGGGCCAGCCTCTT
CACTTCAAATCCTGTTCCCAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_o01.g1 MSMg01no507_o01.g1 CHROMAT_FILE:
MSMg01no507_o01.g1 PHD_FILE: MSMg01no507_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:34 2005
         (621 letters)



>mm_chr9_119104904_119105924
          Length = 1021

 Score = 1104 bits (571), Expect = 0.0
 Identities = 589/595 (98%)
 Strand = Plus / Minus

                                                                        
Query: 27   attcaaaggttgctatatttctgtttagatttttattttatgtatgtgagtacactgcgg 86
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1021 attcaaaggttgctatatttctgtttagatttttattttatgtatgtgagtacactgctg 962

                                                                        
Query: 87   ctgtcttcagacacaccagaagagggcatcagatcccattacagatggttgtgagccatc 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  ctgtcttcagacacaccagaagagggcatcagatcccattacagatggttgtgagccatc 902

                                                                        
Query: 147  atgtggttgctaaaaattgaactcaggacctctggaagagcagccagtgctcttaactgc 206
            ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 901  atgtggttgctaagaattgaattcaggacctctggaagagcagccagtgctcttaactgc 842

                                                                        
Query: 207  tgagacaactctccgggcccttctgtttagatttttcactaccatgtgcccactgtttgg 266
            |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  tgagccaactctccaggcccttctgtttagatttttcactaccatgtgcccactgtttgg 782

                                                                        
Query: 267  ctgtgaggcaccttgatagacagtgaaacaggggcgctctagagagtgaaggcaaccctg 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  ctgtgaggcaccttgatagacagtgaaacaggggcgctctagagagtgaaggcaaccctg 722

                                                                        
Query: 327  gacactgcacctgctggtaacatgagtatgtttcttcctttcagtttgacctggtgtgtg 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  gacactgcacctgctggtaacatgagtatgtttcttcctttcagtttgacctggtgtgtg 662

                                                                        
Query: 387  atcgaaagaacctgaagaagacctcccagtcggtgttcatggctggtctccttgttgggg 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  atcgaaagaacctgaagaagacctcccagtcggtgttcatggctggtctccttgttgggg 602

                                                                        
Query: 447  ccctggtctttgggcctgtctgtgactggtatgtgctgctggtccggtgtgcttttaggc 506
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 601  ccctggtctttgggcctgtctgtgactggtatgtgctgctggtccggcgtgcttttaggc 542

                                                                        
Query: 507  ttctggtgcttgctcagttaccccctccccaccccccagagctataccagtagccatcaa 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  ttctggtgcttgctcagttaccccctccccaccccccagagctataccagtagccatcaa 482

                                                                   
Query: 567  gatgagtcctattgcctacctaccagggaaaaccctatctccccactctgacaga 621
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  gatgagtcctattgcctacctaccagggaaaaccctatctccccactctgacaga 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)