BAC Information

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BAC

Clone NameMSMg01-507P15
Chromosome9 (Build37)
Map Location 77,964,681 - 77,965,342
singlet/doubletsinglet
Overlap geneIck
Upstream gene2310046A06Rik, 5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9
Downstream geneC920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507P15.T7 (MSMg01no507_p15.b1)MSMg01-507P15.TJ (MSMg01no507_p15.g1)
ACCAG581997AG581998
length725766
length of high quality
(start - end)		688 (34 - 721)572 (77 - 648)
definitionCHROMAT_FILE: MSMg01no507_p15.b1 PHD_FILE: MSMg01no507_p15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:43 2005CHROMAT_FILE: MSMg01no507_p15.g1 PHD_FILE: MSMg01no507_p15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCTGGGT
ATAGTCACCATTGTAGTTTCATCTCTGTTGCTGAGATAGAACACAGTGAC
CAAAAGCAACTTAGGGCAGTTGACATTCCATCATGGAGAGGAGTCAGGCA
GGAACCTTAAGCAAAAGCCATGCAGGAATACTGCTTGCTAATGGCTTATG
CTTAGTTAGCTTTCTATCTACCTATCTATCTATCTATCTATCTATCTATC
TATCTATCTATCTATCTATCTATCTATTATAGGTAAGTACATTGTAACTG
TCTTCAGACCCTCCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTG
AGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAG
TCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTTAGTTAGCTTTCT
TACAAATCACCTGCTCAGGATATGGTGCCACCCACAGTGGGCTGGGCCTA
CCTACATCCACAGTACAGACCAATCCAGGTAACCCTTCAGTTGAAACTCC
CTTCTAGGGGACTCTGAGCTGTGCCAAGTTGGCAGTGAGAGCTAAGGAGG
ACAGTGGCTTTTCTGTGTAAGTTGATGTGCAGAAAGGAGCAGGATCTCGC
TTGACTGTCCATTCTTCATTAGCATTCTTTGAAGGCCATAGCATTTCTTA
CAATTAAATGTAATTAGTTAGTTAA

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGCCTAGACAGACACTCAGCC
AAGGCTGGTGGGTCCTAACAGCTGAGTAATGACCTTCAAGGCTGGAGTGC
CTTCGTCTCTGATGACCACCACTCTGCCTGCCTCCTTCCCAGGCTCCTCC
ACCTTTCCAGGACTAGGCTATGCCTGTCCCTTCCTACCCCTAACTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGAAATCA
ATCACACCCCCTTCAGCCTTTCTTTCTGTATAGAGAGATGAGAATGTTTG
CTATGCTGTGGCGTGTCTGTTGTCTCCTCAGCCTGGGCAGCATGGAGCAA
GCCCAGCCGTCTCGGTACCTAGATCAAGGATTTACTTTGTGATGGCATAG
TGAAGGTTGTCAACTTGAACTACGTCTGGAATGAACTAAAACCCAATGGG
AGGGGTACACCTGTGAAAGTTTTCTTTCTTAATTAAACCATTTGAAGTGG
GAAGACCCACTTTAAATTCAGATCTCCTGAGGTAGGAAGATCTACCTTTA
ATGTTGGCCACCGCTTCAGCTGGCAGGCTATAATAAAGGCTGTGAAAGAA
AGAGGCTTGCTCTCTTTGCCTGCTTATTCTCTTCTTGCCAACAAGTCCGT
TCCTTCAAGCAGACACTGAAGATGAGCTGAAACATCCGTCCTCCTTCACT
GAACAACTACTGGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_p15.b1 MSMg01no507_p15.b1 CHROMAT_FILE:
MSMg01no507_p15.b1 PHD_FILE: MSMg01no507_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:43 2005
         (688 letters)



>mm_chr9_77964455_77965542
          Length = 1088

 Score = 1210 bits (626), Expect = 0.0
 Identities = 659/682 (96%), Gaps = 20/682 (2%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctgggtatagtcaccattgtagtttcatctctgttgctgagatagaacacagtga 66
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 gaattctgggtatagtgaccattgtagtttcatctctgttgctgagatagaacacagtga 286

                                                                       
Query: 67  ccaaaagcaacttagggcagttgacattccatcatggagaggagtcaggcaggaacctta 126
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 287 ccaaaagcaacttagggcagttgactttccatcatggagaggagtcaggcaggaacctta 346

                                                                       
Query: 127 agcaaaagccatgcaggaatactgcttgctaatggcttatgcttagttagctttctatct 186
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 347 agcaaaagccatgcaggaatgctgcttgctaatggcttatgcttagttagctttctatct 406

                                                                       
Query: 187 acctatctatctatctatctatctatctatctatctatctatctatctatctatctatta 246
           |||||                 |   ||||||||||||||||||||||||||||||||||
Sbjct: 407 accta-----------------c---ctatctatctatctatctatctatctatctatta 446

                                                                       
Query: 247 taggtaagtacattgtaactgtcttcagaccctccagaagagggcatcagatctcattac 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 taggtaagtacattgtaactgtcttcagaccctccagaagagggcatcagatctcattac 506

                                                                       
Query: 307 agatggttgtgagccaccatgtggttgctgggatttgaactcaggacctctggaagagca 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 agatggttgtgagccaccatgtggttgctgggatttgaactcaggacctctggaagagca 566

                                                                       
Query: 367 gtcagtgctcttaaccactgagccatctctccagcccttagttagctttcttacaaatca 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtcagtgctcttaaccactgagccatctctccagcccttagttagctttcttacaaatca 626

                                                                       
Query: 427 cctgctcaggatatggtgccacccacagtgggctgggcctacctacatccacagtacaga 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 cctgctcaggatatggtgccacccacagtgggctgggcctacctacatccacagtacaga 686

                                                                       
Query: 487 ccaatccaggtaacccttcagttgaaactcccttctaggggactctgagctgtgccaagt 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ccaatccaggtaacccttcagttgaaactcccttctaggggactctgagctgtgccaagt 746

                                                                       
Query: 547 tggcagtgagagctaaggaggacagtggcttttctgtgtaagttgatgtgcagaaaggag 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tggcagtgagagctaaggaggacagtggcttttctgtgtaagttgatgtgcagaaaggag 806

                                                                       
Query: 607 caggatctcgcttgactgtccattcttcattagcattctttgaaggccatagcatttctt 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 caggatctcgcttgactgtccattcttcattagcattctttgaaggccatagcatttctt 866

                                 
Query: 667 acaattaaatgtaattagttag 688
           ||||||||||||||||||||||
Sbjct: 867 acaattaaatgtaattagttag 888


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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