Query= MSMg01no508_h22.b1 MSMg01no508_h22.b1 CHROMAT_FILE:
MSMg01no508_h22.b1 PHD_FILE: MSMg01no508_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:25 2005
(477 letters)
>mm_chr9_51335667_51336543
Length = 877
Score = 890 bits (460), Expect = 0.0
Identities = 473/482 (98%), Gaps = 8/482 (1%)
Strand = Plus / Plus
Query: 4 ggaattcggggtaacctaaatctatgtccccaggccatgggtaatcatttagctccagaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcggggtaacctaaatctatgtccccaggccatgggtaatcatttagctccagaa 263
Query: 64 taagtagtattttatccccttcaggctgaaagctgtgtttgttgcattgaactttagttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taagtagtattttatccccttcaggctgaaagctgtgtttgttgcattgaactttagttt 323
Query: 124 ctttgagacagaggaatgaccaaaatcacatttgagtcttaaagaccactcttgttacat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctttgagacagaggaatgaccaaaatcacatttgagtcttaaagaccactcttgttacat 383
Query: 184 attgtaatagtctggctttctatgcctacccttattctgaatgataacatagagaccttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 384 attgtaatagtctggctttctatgcctacccttattctgaatgataacataaagaccttt 443
Query: 244 atatttattaaaagcttcaagcattgtagctgggcagatgctcagatagtctgagttgac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atatttattaaaagcttcaagcattgtagctgggcagatgctcagatagtctgagttgac 503
Query: 304 aatgctggcctgacttactttctaactatatggctcatacctgccatcttagtcttgcat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aatgctggcctgacttactttctaactatatggctcatacctgccatcttagtcttgcat 563
Query: 364 ggcacctccttcttcatctatgtcaatgtaccaatggcaattctctggttcccacctgag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggcacctccttcttcatctatgtcaatgtaccaatggcaattctctggttcccacctgag 623
Query: 424 accctctgtctgtctgtctgtctgtctgtctgtctgtct--------ctggctatgtctt 475
||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 624 accctctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctctggctatgtctt 683
Query: 476 gc 477
||
Sbjct: 684 gc 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_h22.g1 MSMg01no508_h22.g1 CHROMAT_FILE:
MSMg01no508_h22.g1 PHD_FILE: MSMg01no508_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:25 2005
(496 letters)
>mm_chr9_51520682_51521580
Length = 899
Score = 880 bits (455), Expect = 0.0
Identities = 487/499 (97%), Gaps = 3/499 (0%)
Strand = Plus / Minus
Query: 1 aaaactctggtcttatgaaagcagccatgaggggg---gaaaaaggatatatatttttaa 57
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 699 aaaactctggtcttatgaaagcagccatgagggggaaaaaaaaaggatatatatttttaa 640
Query: 58 acaatgtaacccaaaccaaaggagacagggctcactctcctggaaactctgcaggccact 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 639 acaatgtaacccaaaccaaaggagacagggctcactctcctggaaactctgcaggtcact 580
Query: 118 gtcaaataaatctaatgacattcctaattcgcgttattgcagtttcagttatttcttcct 177
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 579 gtcaaataaatctaatgacattcctaattcacgttattgcagtttcagttatttcttcct 520
Query: 178 tccttctgattgtaccttcctttatttgtatttgtcttttaagtctgaagctgctcatag 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tccttctgattgtaccttcctttatttgtatttgtcttttaagtctgaagctgctcatag 460
Query: 238 cagaactacgtgagatggttcccagtctagaaacaaataaactttagggtatttttatta 297
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 459 cagaactacttgagatggttcccagtctaaaaacaaataaactttagggtatttttatta 400
Query: 298 atgctactaatgagggctttgcaaattcagaagcaggcacggtacttgttatactcgtca 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 atgctactaatgagggctttgcaaattcagaagcaggcacggtacttgttatactcgtca 340
Query: 358 tttctaaaagagggagacctgctgattcacccacagttttgaggtcaatacttgtaagaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tttctaaaagagggagacctgctgattcacccacagttttgaggtcaatacttgtaagaa 280
Query: 418 tattatctataagaaggcaaaatgctattctagagagatgtgtgagcagaggcaacccgg 477
||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 279 tatcatctataagaaagcaaaatgctattctagagagatgtgtaagcagaggcaacccag 220
Query: 478 gagctgacattgtttcaag 496
|||||||||||||||||||
Sbjct: 219 gagctgacattgtttcaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 899
Length adjustment: 10
Effective length of query: 486
Effective length of database: 889
Effective search space: 432054
Effective search space used: 432054
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
