BAC Information

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BAC

Clone NameMSMg01-509G20
Chromosome9 (Build37)
Map Location 108,094,791 - 108,164,950
singlet/doubletdoublet
Overlap geneDag1
Upstream geneDock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108
Downstream geneNicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509G20.T7 (MSMg01no509_g20.b1)MSMg01-509G20.TJ (MSMg01no509_g20.g1)
ACCAG583106AG583107
length776780
length of high quality
(start - end)		698 (67 - 764)599 (76 - 674)
definitionCHROMAT_FILE: MSMg01no509_g20.b1 PHD_FILE: MSMg01no509_g20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:39 2005CHROMAT_FILE: MSMg01no509_g20.g1 PHD_FILE: MSMg01no509_g20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,094,791 - 108,095,475)(108,164,352 - 108,164,950)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAGTCTTTCCACTTCCTGTTGTTTTCTTACATGTCTGCTATGCTT
CTGGTTAAACTCCTGAGCCTGTCTGGAACTGAGGGAGGAGAGCCTTCCCT
GTGGTGCCCTTGCTGTGCTGAAGAGAGTCTTTGTTTCGTTTCTGGTGACT
ATTTATGAACAGGCACCATGTGAGTCAGTATCTCAGATCGGCTACTCCCA
GTGGGACCTTGGAATCACCAAGCCCCTAGTTCCTCATGTGCAAAGTTAGG
ATAGTAACAGGGCTTGTAATAATGAGGCTCTGAGGGTGAAGTCACTGGTG
GGGGGTGACACACAAGAATGAGTCCAGCACACACAGATAATGCTGCCATT
TGCTCTCTTGGGGATTGGTGACACATAGGCAACATGGCTGGTCAGACTGT
CCCATACTAGACTGTCCCATACTAGACAGTTTTAGCTTCACAAACACCAG
CTAGTGGGACATCTTGGGACCTTTACCTGGGGAAATAAAACTCACTCCTG
ATAGGGCACTAAAACCAGACAAAGTAATTCCACCAAGATCCAAGCTGGCA
AACCAATGAGGTTATTGGACTCACCTACAGAGCATGCATGACTCCAAAGC
ACCCATCTCACTGGAAAGTGTCACACCCAACATGAATGACAACTTTCCCA
CAAACGCATAGATGGAGTCTCCCTTGTCCCCATCTACAGATAACCTTCCA
TCCTCTATACATTTACACACCTCCCA

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACGGTAACGGGTTGTACAGATCGA
TGGTTTAAATATGGAGAATTGAAGTTCTTTTTGCCTTGAAGTCAAGGACA
TGGTCAGCGTGCTTAAAGGACATAGGGGCTATTGGAGAAATCAGATCTCA
CTAGGGAGTTAGTTGCAAGGCGTGTGGGATCCTGTGTGAAGGTAGGAGTA
AGTAGCACTATGCAGGCAGCACCGGGTGGGAATGTGCAAGCATTGTTGAT
ATGTACCTCTGTTGAAATTGTTATCGGACAAGTCCTCATCATTCTAAAAA
ACCTGATTTGACAAGATGCATTCATTTAGTAAATGTTTGACTTTACTCCC
TGGGGACTTCTGGGTAGGACTTGGGGGCCCATGTAATACATCTTGCTTTG
TCCTTAACTGATTTTGGGTTCAGTGAATGAGAATCAGAACCCATGACGAG
AATATGCTTGCTTGCATGGTAGCCTGAAGAGAGCCTTCCTGAGCCGTGCG
TGGCCTTCAGGGCCAGCAGGAATTAGCTGGGGGACATAAAGGCTTGTACA
CCCGGAACCACATGTACATGGTTTAAAATAGAGCCTGGGAGTCTTCCAGC
TGGACAGGTGGGAGCTCTGGGCCTTCTTTGCACATAGGAGCTCCAACCTC
TTAAGGTACAGGAGCTTGAGAATGCTTTTAATCATTTGAGTGGCATAATC
TAGATCGAGTTTAGAAAAGATATGTTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_g20.b1 MSMg01no509_g20.b1 CHROMAT_FILE:
MSMg01no509_g20.b1 PHD_FILE: MSMg01no509_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:39 2005
         (698 letters)



>mm_chr9_108094591_108095690
          Length = 1100

 Score = 1220 bits (631), Expect = 0.0
 Identities = 676/701 (96%), Gaps = 19/701 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcctgttgttttcttacatgtctgctatgcttctggttaaactcctgagcctgtctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcctgttgttttcttacatgtctgctatgcttctggttaaactcctgagcctgtctgg 260

                                                                       
Query: 61  aactgagggaggagagccttccctgtggtgcccttgctgtgctgaagagagtctttgttt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 aactgagggaggagagccttccctgtggtgcccttgctgtgctgaagagagtttttgttt 320

                                                                       
Query: 121 cgtttctggtgactatttatgaacaggcaccatgtgagtcagtatctcagatcggctact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtttctggtgactatttatgaacaggcaccatgtgagtcagtatctcagatcggctact 380

                                                                       
Query: 181 cccagtgggaccttggaatcaccaagcccctagttcctcatgtgcaaagttaggatagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccagtgggaccttggaatcaccaagcccctagttcctcatgtgcaaagttaggatagta 440

                                                                       
Query: 241 acagggcttgtaataatgaggctctgagggtgaagtcactggtggggggtgacacacaag 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagggcttgtaataaggaggctctgagggtgaagtcactggtggggggtgacacacaag 500

                                                                       
Query: 301 aatgag--tccagcacacacagataatgctgccatttgctctcttggggattggtgacac 358
           ||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 aatgagagtccagcacacacagataatgctgccatttgctctcttggggatttgtgacac 560

                                                                       
Query: 359 ataggcaacatggctggtcagactgtcccatactagactgtcccatactagacagtttta 418
           |||||||||||||||||||||||||||||||||||||||||               ||||
Sbjct: 561 ataggcaacatggctggtcagactgtcccatactagactgt---------------ttta 605

                                                                       
Query: 419 gcttcacaaacaccagctagtgggacatcttgggacctttacctggggaaataaaact-c 477
           |||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | |
Sbjct: 606 gcttcacaaacaccagctagtgggacatcttgggacctctacctggggagataaaa-tgc 664

                                                                       
Query: 478 actcctgatagggcactaaaaccagacaaagtaattccaccaagatccaagctggcaaac 537
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 attcctgatagggcactaaaaccagacaaagtaattccaccaagatccaagctggcaaac 724

                                                                       
Query: 538 caatgaggttattggactcacctacagagcatgcatgactccaaagcacccatctcactg 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 caatgaggttattggactcacctacagagcatgcatgactccaaagcacccatctcactg 784

                                                                       
Query: 598 gaaagtgtcacacccaacatgaatgacaactttcccacaaacgcatagatggagtctccc 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gaaagtgtcacacccaacatgaatgacaactttcccacaaacgcatagatggagtctccc 844

                                                    
Query: 658 ttgtccccatctacagataaccttccatcctctatacattt 698
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 ttgtccccatctacagataaccttccatcctctatacattt 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1100
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1090
Effective search space:   749920
Effective search space used:   749920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no509_g20.g1 MSMg01no509_g20.g1 CHROMAT_FILE:
MSMg01no509_g20.g1 PHD_FILE: MSMg01no509_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:39 2005
         (599 letters)



>mm_chr9_108164152_108165150
          Length = 999

 Score = 1143 bits (591), Expect = 0.0
 Identities = 597/599 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacggtaacgggttgtacagatcgatggtttaaatatggagaattgaagttctttttgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 cacggtaacgggttgtacagatcgatggtttaaatatggagaattgaagttctttttgcc 740

                                                                       
Query: 61  ttgaagtcaaggacatggtcagcgtgcttaaaggacataggggctattggagaaatcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttgaagtcaaggacatggtcagcgtgcttaaaggacataggggctattggagaaatcaga 680

                                                                       
Query: 121 tctcactagggagttagttgcaaggcgtgtgggatcctgtgtgaaggtaggagtaagtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tctcactagggagttagttgcaaggcgtgtgggatcctgtgtgaaggtaggagtaagtag 620

                                                                       
Query: 181 cactatgcaggcagcaccgggtgggaatgtgcaagcattgttgatatgtacctctgttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cactatgcaggcagcaccgggtgggaatgtgcaagcattgttgatatgtacctctgttga 560

                                                                       
Query: 241 aattgttatcggacaagtcctcatcattctaaaaaacctgatttgacaagatgcattcat 300
           |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aattgtcaccggacaagtcctcatcattctaaaaaacctgatttgacaagatgcattcat 500

                                                                       
Query: 301 ttagtaaatgtttgactttactccctggggacttctgggtaggacttgggggcccatgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttagtaaatgtttgactttactccctggggacttctgggtaggacttgggggcccatgta 440

                                                                       
Query: 361 atacatcttgctttgtccttaactgattttgggttcagtgaatgagaatcagaacccatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atacatcttgctttgtccttaactgattttgggttcagtgaatgagaatcagaacccatg 380

                                                                       
Query: 421 acgagaatatgcttgcttgcatggtagcctgaagagagccttcctgagccgtgcgtggcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acgagaatatgcttgcttgcatggtagcctgaagagagccttcctgagccgtgcgtggcc 320

                                                                       
Query: 481 ttcagggccagcaggaattagctgggggacataaaggcttgtacacccggaaccacatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttcagggccagcaggaattagctgggggacataaaggcttgtacacccggaaccacatgt 260

                                                                      
Query: 541 acatggtttaaaatagagcctgggagtcttccagctggacaggtgggagctctgggcct 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 acatggtttaaaatagagcctgggagtcttccagctggacaggtgggagctctgggcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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