BAC Information

Click to search

BAC

Clone NameMSMg01-509J09
Chromosome9 (Build37)
Map Location 78,860,896 - 79,051,347
singlet/doubletdoublet
Overlap genenone
Upstream geneGcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
Downstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509J09.T7 (MSMg01no509_j09.b1)MSMg01-509J09.TJ (MSMg01no509_j09.g1)
ACCAG583227AG583228
length751760
length of high quality
(start - end)		664 (72 - 735)365 (328 - 692)
definitionCHROMAT_FILE: MSMg01no509_j09.b1 PHD_FILE: MSMg01no509_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:51 2005CHROMAT_FILE: MSMg01no509_j09.g1 PHD_FILE: MSMg01no509_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,050,904 - 79,051,347)(78,860,896 - 78,861,259)
sequence
NAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGAGGATCCGCG
GAATTCTTTATTCTCTGCATGTAGCTCTATTGTGATTCCATTCAAATGTA
TGAATGTGGGTCATAATCAAAAACACATCTTAACACTGTTTGATTGTCTT
TAAGTGCAGTGCTTCTGGTATGCTCATCAAGTGATTTGTGGGGTTCATAT
GTTCTGGTTTTAGATATTAGATTGAAATAAGACATTTTATGCCACTTCCA
TACCTTAAAATATAGAATGTATTAAAAATAATATTTCTTAATAGCTTGTA
TCTCTTTGTATATTTTTCTTTTTTCTATTGCTGGGAAGAGACACCATGAC
CAAGGCAACTATTAGAAAAGAAAGCATTTAATTGGGGTCTTGCTTACAGT
TCCAGATGGCTAGTCCTGTCAGAGCCCACGAAAGCAAGCATGGAACAGGA
ACAGTAGTTGAGAGCTACATCGTTGTCCGTAGATCAAGACAGAGATTGGG
TCTGGAGAAGGCTTCTGAAACCTCAAAGCCAACCACCAATGATACACTTC
TTCCAACAAGGCCATACCTTCCAATCCTTGTAATCCTTTCAAATAGTTCC
ACTCCCTGGTGACTAAATATTTTAATATATGAGTTTACGTGGGCCATTCT
TACACTACCACATCCATTTTATCTTATTTAGACACATAGCAGTTATTTAT
GAGAGGCAATTACCCAGTTACAGAAAATTCAAATAAGGAGGTAGACATTC
A

CCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTGCAACAAGAAAATCTCTATATTTGAGAGGGGTTA
ATTCCCCCATAATCTTTTCTTTGCTTGTCACTGAGGTTGTATTCTGAGAC
ATTCCTGAGTTTTTGACTGAAGTATTTTCTCCTTGATTTTGACCTTCATT
TCCAATAGAAAATGGATGTCTTTTGATCCTGCTCATCCAGCAGGGATACT
TTTTTCATCTAGAAGTGATATTTTCCCCCTTTGGCTATTCTATTTGTGGT
TTCCACCTTTTTGGCTTTTTANTTTGTTCTGCTTCAGGGTTCAGCTGTCC
CCTCTCTGTCACATACATATAACAGATTAGCCAAGTGGCAGCAGGCATTG
CCTTGGGACTAGTGCACTCCAAACATCTGACATTGTTCCTTGGATAAATT
TTTGTCCCATTATTATTGTTGATGTGGTTCCTAGGTGACCCTGATGAGAA
TGTCCAGGAGGCTCTTTGTCACGTTGACAGTTCCAAGGCTTAGCAGATGC
TTGTTATGATAGACAGATGCCTATCTGGTGCCTCATGACTTTGCTGTGGC
TGCATACTACACTGATTACATTGTGCTAGATGCTATCCATCACAAATACA
CACCCTGTTCTCTGCCTTCTGGGAGATGATGTTAATTCATAGAGCTTGGA
AAGATACAGGGTCACTTACTGTATGTTTGGAAAGCTACTTTTGATTTTAT
TTCTCTACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_j09.b1 MSMg01no509_j09.b1 CHROMAT_FILE:
MSMg01no509_j09.b1 PHD_FILE: MSMg01no509_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:51 2005
         (664 letters)



>mm_chr9_79050904_79051967
          Length = 1064

 Score =  789 bits (408), Expect = 0.0
 Identities = 435/444 (97%)
 Strand = Plus / Minus

                                                                       
Query: 2   agctctattgtgattccattcaaatgtatgaatgtgggtcataatcaaaaacacatctta 61
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agctctattgtaattccattcaaatgtatgaatgtgggtcataatcaaaaacacatctta 385

                                                                       
Query: 62  acactgtttgattgtctttaagtgcagtgcttctggtatgctcatcaagtgatttgtggg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acactgtttgattgtctttaagtgcagtgcttctggtatgctcatcaagtgatttgtggg 325

                                                                       
Query: 122 gttcatatgttctggttttagatattagattgaaataagacattttatgccacttccata 181
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 324 gttcatatgttctggttttagatactagattgaaataagacattttatgccacttccata 265

                                                                       
Query: 182 ccttaaaatatagaatgtattaaaaataatatttcttaatagcttgtatctctttgtata 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccttaaaatatagaatgtattaaaaataatatttcttaatagcttgtatctctttgtata 205

                                                                       
Query: 242 tttttcttttttctattgctgggaagagacaccatgaccaaggcaactattagaaaagaa 301
           ||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tttgtctccattctattgctgggaagagacaccatgaccaaggcaactattagaaaagaa 145

                                                                       
Query: 302 agcatttaattggggtcttgcttacagttccagatggctagtcctgtcagagcccacgaa 361
           | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 accatttaattggggtctagcttacagttccagatggctagtcctgtcagagcccacgaa 85

                                                                       
Query: 362 agcaagcatggaacaggaacagtagttgagagctacatcgttgtccgtagatcaagacag 421
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 84  agcaagcatggaacaggaacagtagttgagagctacatcgttatccgtagatcaagacag 25

                                   
Query: 422 agattgggtctggagaaggcttct 445
           ||||||||||||||||||||||||
Sbjct: 24  agattgggtctggagaaggcttct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no509_j09.g1 MSMg01no509_j09.g1 CHROMAT_FILE:
MSMg01no509_j09.g1 PHD_FILE: MSMg01no509_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:52 2005
         (365 letters)



>mm_chr9_78860695_78861459
          Length = 765

 Score =  704 bits (364), Expect = 0.0
 Identities = 364/364 (100%)
 Strand = Plus / Plus

                                                                       
Query: 2   ctgcttcagggttcagctgtcccctctctgtcacatacatataacagattagccaagtgg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ctgcttcagggttcagctgtcccctctctgtcacatacatataacagattagccaagtgg 261

                                                                       
Query: 62  cagcaggcattgccttgggactagtgcactccaaacatctgacattgttccttggataaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cagcaggcattgccttgggactagtgcactccaaacatctgacattgttccttggataaa 321

                                                                       
Query: 122 tttttgtcccattattattgttgatgtggttcctaggtgaccctgatgagaatgtccagg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tttttgtcccattattattgttgatgtggttcctaggtgaccctgatgagaatgtccagg 381

                                                                       
Query: 182 aggctctttgtcacgttgacagttccaaggcttagcagatgcttgttatgatagacagat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aggctctttgtcacgttgacagttccaaggcttagcagatgcttgttatgatagacagat 441

                                                                       
Query: 242 gcctatctggtgcctcatgactttgctgtggctgcatactacactgattacattgtgcta 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gcctatctggtgcctcatgactttgctgtggctgcatactacactgattacattgtgcta 501

                                                                       
Query: 302 gatgctatccatcacaaatacacaccctgttctctgccttctgggagatgatgttaattc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gatgctatccatcacaaatacacaccctgttctctgccttctgggagatgatgttaattc 561

               
Query: 362 atag 365
           ||||
Sbjct: 562 atag 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |