BAC Information

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BAC

Clone NameMSMg01-509P19
Chromosome9 (Build37)
Map Location 66,289,281 - 66,289,638
singlet/doubletsinglet
Overlap geneHerc1
Upstream geneMtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2
Downstream geneFbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1, Tln2, LOC100041390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509P19.T7 (MSMg01no509_p19.b1)MSMg01-509P19.TJ (MSMg01no509_p19.g1)
ACCAG583532AG583533
length774779
length of high quality
(start - end)
334 (327 - 660)357 (327 - 683)
definitionCHROMAT_FILE: MSMg01no509_p19.b1 PHD_FILE: MSMg01no509_p19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:26 2005CHROMAT_FILE: MSMg01no509_p19.g1 PHD_FILE: MSMg01no509_p19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGCCGGCGCGGAAT
TCTCAACTGATCCTAACAAATGGCAGAGAAGCACCTGAAAAAATGTTCAA
TATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCATGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATG
CTAGCAAGGATGTGGAGAAAGAGGAACACTCCTCCACTGCTGGTGGGATT
GCAAGCTGGTACAACCACTCTGGAAGTCAGTCTGGAGGTTCCTCAGAAAA
TTGGACATAATACTACCGTTTTTATCCAGCAATACCTCTCCTGGGCATAT
ACGCAGAAGATGTTCCAACTTGTAATAAGGAGACATGCTCCACTATGTTC
ATAGCAGCCTTATTCACCACAGCCAGAAGCTGGAAAGAACCCAGATGTCC
CTCAACAGAAGAATGGATGCAGAAAATGTGGTACATTTACACAATGGAGT
ACTACTCAGCTATTAAAAACAATGAATTTATGAAATTCTTGGACAAATGG
ATGTATCTGGAGGATATCATCCTTAGTGAGGTAACCCAATCACAAAAGAA
GTCATTAAATATGCACTCACTGATAAGTGGATATTAGCCCAGAAACATAG
AACACCCAAGATACAATTTGCAAAACACAAGAAAATCAAGAAGAGGGAAG
ACCAACGGGTGGATACTTCATTCCTCCTTAGAATAGGGAACAAAATACCC
ATGAAAGGAGTTACAGAGACAAAG
ATGATGTGGGAGGTCTGGAGGACGCCTGGTTTCAAAATATGGGGTGAACT
ATAGAAGGATTCGCAAAAATCGCCTTACCTTCCACTGATAGCACCCAGAA
GTCACCCCAGTAGATGCTAATCCATATCCTTTTCCTCCACTGCCATGAGT
TAAAATCTGTCCATTTTCCACAATGCAACACTGAGCCTTCTCTGGATCAA
AAGAGACTTCTTGTATGGGGAGATTTTCATCCTCTTCCTCCAACTCTCCT
TGCTTCTACCAGAAAGGAGGGTGGGTCAATATCTGGGAGTAAACAGACCT
CTAATACATTCCTTGCTTTNATTTCTCAGCTATTATATATCTACCAGGTT
TTAGTTACTGTGCAAGACAGTGCCTATTAAAAAAAAAAGCTTATTGTTCA
TTTAGGGCACATGCACACTAATCAGTCAGTTACATAGTGAGACAGGAATC
CAGGGTGGTAATTCCAAGGTTTTTCTCTTCAGTAATAACTAGAGGGGGTG
AAGGAACAGAAAGTGATGGAGCTAAGGATGTTATGTTTAACACAGTAAGT
ATAAGTTGTCTGTAAGGTTATCATTCAAGTGGTGAGTTAATGGAAGATAG
CGTATAAAATTTAGGTTACCAATGGCATAGAAAGCCAAATAAGGTTTCTT
TAAATATGGAAAAGGGGAGAGGTGTGATAGTTAGGGGGTAAATGATGGGG
ATTATGGCTNTNTTTTTCTCTTCCCCTCCCCCCTTTTTTTTTTCTCTCTT
ATCCTCGTTTTTTTTTTCTTTATTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_p19.g1 MSMg01no509_p19.g1 CHROMAT_FILE:
MSMg01no509_p19.g1 PHD_FILE: MSMg01no509_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:26 2005
         (357 letters)



>mm_chr9_66289081_66289838
          Length = 758

 Score =  654 bits (338), Expect = 0.0
 Identities = 353/358 (98%), Gaps = 1/358 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagctattatatatctaccaggttttagttactgtgcaagacagtgcctattaaaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cagctattatatatctaccaggttttagttactgtgcaagacagtgcctattaaaaaaaa 499

                                                                       
Query: 61  aagcttattgttcatttagggcacatgcacactaatcagtcagttacatagtgagacagg 120
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 498 aagcttattgttcatttagggcacatggagactaatcagtcagttacatagtgagacagg 439

                                                                       
Query: 121 aatccagggtggtaattccaaggtttttctcttcagtaataactag-agggggtgaagga 179
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 438 aatccagggtggtaattccaaggtttttctcttcagtaataactagaagggggtgaatga 379

                                                                       
Query: 180 acagaaagtgatggagctaaggatgttatgtttaacacagtaagtataagttgtctgtaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 acagaaagtgatggagctaaggatgttatgtttaacacagtaagtataagttgtctgtaa 319

                                                                       
Query: 240 ggttatcattcaagtggtgagttaatggaagatagcgtataaaatttaggttaccaatgg 299
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 318 ggttatcattcaagtggtgagttaatggaagatagcatataaaatttaggttaccaatgg 259

                                                                     
Query: 300 catagaaagccaaataaggtttctttaaatatggaaaaggggagaggtgtgatagtta 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 catagaaagccaaataaggtttctttaaatatggaaaaggggagaggtgtgatagtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 758
Length adjustment: 9
Effective length of query: 348
Effective length of database: 749
Effective search space:   260652
Effective search space used:   260652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)