BAC Information

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BAC

Clone NameMSMg01-510D15
Chromosome9 (Build37)
Map Location 71,085,410 - 71,085,572
singlet/doubletsinglet
Overlap geneAldh1a2
Upstream geneMyo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660
Downstream geneGrinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, Tcf12, EG666001, LOC665959, EG665964, LOC665970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510D15.T7 (MSMg01no510_d15.b1)MSMg01-510D15.TJ (MSMg01no510_d15.g1)
ACCAG583713AG583714
length778742
length of high quality
(start - end)
163 (87 - 249)664 (79 - 742)
definitionCHROMAT_FILE: MSMg01no510_d15.b1 PHD_FILE: MSMg01no510_d15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:45 2005CHROMAT_FILE: MSMg01no510_d15.g1 PHD_FILE: MSMg01no510_d15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACCATAATTGGCGGGGAGAGAAAGAAGACGAGTTCAAAATCAGGGGCGG
AAGGACNCAGTTTCAACAAACACGAGAAGCNGGAACCATGTTCTCATTAT
AGCTAGGTTTTAATATGTAATGATGACTACAAAGACATCATAAAGAATAA
TAAAATTTAGGTAGAAGGGTCCTAAAACCCAAGCCAGCTGGGGCTCTGTC
TCATACTTCTTCCAGAAAAACTGGCTTTGGTTTCCACTGTGTAACCATCT
GTATGGCAAACTAGTGCTTTGACAGCCTAGCCTACTAAAGTTTTATTTTA
ATATTTACTGCTGATTATTTTTGTCTGATCTGAACATTAATACAAGCTGG
GTCCGTTTATGAATAGACTGTCACAGAGCTAGAAGGGGTCTTAGACACTA
CTTACATATTCATACTCCAATAACTTTGTCTGATGCCTGAGTGCTTGACA
TTGGCACATCATAAGCCTTAACCACCACGCTCTGATTTTCACGCCTGTGT
TTTTCCTACATCTTATTTTTGCCGACATCACCTCGATTATCCAGCTGGAT
ATTTAGTAAGGTAATTTGAACTATCTCTCCCCTGCTTTTCCCTTCCCGTG
TTTGTTACAAACTCCCGGTATCAACACTTTTTCAAATTTCCTCCCGTTTA
TTTAACCTTTATCTTGTTTTTTAAAGTTCCCTCTTTCTTCTTTCAAGTAA
ATACCTTGTTAATAGTACTTTTTAACCTTTTCCCATCTGGGCACAATGTT
TCCTATTTGTTCCCTAAATGTCACTAAT
NGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAACACGGGGNN
GAACNANAGAAGTTTACACAAAATGCACTTCACACTGCTGGCTTCTGGCA
GTGGTATATTGGAAACCTACTACTATAGAAACTTCACCCCTCCACACACA
CACACCAAGAGATTAGTGAATTTACTGTATAACAGGGTAACAATGCCCTA
CTAGACACCATAGGATAATAAACAAAAGCCCAGTGTAAGGAATGGGTGAC
CTCCTTTGGAGCTATTGACAAAGGAGGTCATATAGATCTCTAATAATTAA
GGCTATTGCCAGTGCTCTTGATTACTGCATTAGTTAGAGTTTCATTTCTG
TGAAGAGACACCATGACCAAGGTAGTTCTTATAAAGGCAAACATTTAATT
GGGGCTGGCTTGCAGTTTCAGAGGTTCAGTCCATTATCATGATAGGAAGC
ATGGTAGTGGGCAGGCAGACATGGTGCTGGAGGAGCCGGGAGTCCTACAT
CTTGATCCAAAGACAGTCAGGAGGGGACTTTCTTCTGCATTGGGCAGAGC
TTGAGTAGTAGGAGACCATCAAACCTGCCTCACAGTGGACACACTTCCTC
CAACAAGGTCACACCTTCTAATAGTGTCACTTCCCATGGGCCAAGCATAT
TCAAACCACCACAGTTACCTTCCAGAACTTGACTTTGTTGCTGATGACAC
AACACACATGAGCCACAGAATATGACAAATCAAACCTGTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_d15.b1 MSMg01no510_d15.b1 CHROMAT_FILE:
MSMg01no510_d15.b1 PHD_FILE: MSMg01no510_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:45 2005
         (163 letters)



>mm_chr9_71085210_71085772
          Length = 563

 Score =  269 bits (139), Expect = 7e-77
 Identities = 157/163 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgttctcattatagctaggttttaatatgtaatgatgactacaaagacatcataaaga 60
           ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 catgttcccattacagctaggttttaatatgtaatgatgactacaaagacatcataaaga 304

                                                                       
Query: 61  ataataaaatttaggtagaagggtcctaaaacccaagccagctggggctctgtctcatac 120
           |||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 303 ataatacaatttaggtagaaggatcctaaaacccaagccagctgggactctgtctcatac 244

                                                      
Query: 121 ttcttccagaaaaactggctttggtttccactgtgtaaccatc 163
           ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 243 ttcttccaggaaaactggctttggtttccactgtgtaaccatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 563
Length adjustment: 8
Effective length of query: 155
Effective length of database: 555
Effective search space:    86025
Effective search space used:    86025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)