BAC Information

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BAC

Clone NameMSMg01-510D23
Chromosome9 (Build37)
Map Location 14,176,270 - 14,176,603
singlet/doubletsinglet
Overlap geneEndod1
Upstream geneLOC100039758, Maml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329, Sesn3
Downstream geneLOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510D23.T7 (MSMg01no510_d23.b1)MSMg01-510D23.TJ (MSMg01no510_d23.g1)
ACCAG583729AG583730
length747752
length of high quality
(start - end)		654 (72 - 725)362 (328 - 689)
definitionCHROMAT_FILE: MSMg01no510_d23.b1 PHD_FILE: MSMg01no510_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:47 2005CHROMAT_FILE: MSMg01no510_d23.g1 PHD_FILE: MSMg01no510_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATGAAATTTGTACGCAAATGGATAGAACTAGAAAATATCATCTT
GAGTGAGGTAACCCAATCACAAAAGAGCACAAATGGTATGCACTCACTGA
TAAGTGGATATTAGCCCAAAAGCTCCAAATAACCAAGATACATTTCACAG
ATCACATGAATCTCAAGAAGAAGGAAGACCAAAGTGTGGGTGCTTTGGTG
CTTCTTAGAAAAACAAAATACTCACAGGAGCAAATATGGAGATAAAGTGT
AGAGCAGAGACTGAAGAAAAGGCCACCCAGAGACTGTCCCACCTGGGGAT
TCATCCTATATACAGTTACCAAATGTAGACACTATTGTGGATGCCAAGAA
GTGTATGCTGAAAACCTGATATGGCTCTCTCCTGAGAGGCCCTACCAGAG
CCTTACAAATACAGCCAACCATTGGACTGAGCACGGGGTCCCCAATAAGG
GAATTAAAGGACTGAAGGAGTTGAAGGGGATTGCCACCCCATAGGAAGAA
CAACAATATCAACCAACCAGAGCCCCCAGAGCTCCCAGGGACTAAGCCAT
CAACAAAGGAGTACACATGGCTCCAGCTGCATATGCTGCAGAGGATGGCC
TTGTCAGGCATCAATGGAATGAGAGATCCTTGGTTTTATGAAGGCTCGAT
AGATGCCCCAGTGAAGGGGAACTGAGGGCAGGGAGATGGGTGTGTGA

ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAACATCACACAATCTCAGAACTCTCT
GCAGCTGGGAAAACTGTACCCCTGCTAGAACACCAGGCAAATCATAGTCA
GCTACTGTGGACAGTCTGAAGCAGCCCCATACCCCACACCTGGGATTAAA
TTAAAACATATTCTTATAATGTGTCTGTGTTTATCAAAGAAACCAAACTC
CAAAGTTGTTGCTATAACTAGTCATCTAAAGAAGATAGATCTCATGTCAT
TCACTGCAGCAAAAACCACATTTTTTCAAAGAAACCTTGAACAGTGTTAC
ACGTGCTTGCCACCTTTGCACGTTGACACCAAGGTGTGCGTGTGCACCAA
AACTCCTAAAATTGTACATATTACATACATTTGTTTTTTCTATATTAGTC
ATACCTCTCTCTCTCTCTGACTCTCACTCTCTCTCTCTCTCTCTCTCTCT
CTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTCGTTCAGACATTC
CAAATATGAGACACCTTCAAGGTTTCAATGAAGATTGCTGTACTCTCTTC
ATCCCTGCAGGATGTCTCGCTTTTCAGGGAAGTAAACCCATGCCAGCCTA
GCATATTCTGACACTAAGTCAGTAATGGAGTGAGCCTAGCTCAAGGACCA
GAGAGGTGATACACAGGGCAGAACTGCCTTGCAATGTGGAAGAAAGAAAG
GA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_d23.g1 MSMg01no510_d23.g1 CHROMAT_FILE:
MSMg01no510_d23.g1 PHD_FILE: MSMg01no510_d23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:47 2005
         (362 letters)



>mm_chr9_14175862_14176623
          Length = 762

 Score =  569 bits (294), Expect = e-166
 Identities = 332/362 (91%), Gaps = 28/362 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagaaaccttgaacagtgttacacgtgcttgccacctttgcacgttgacaccaaggtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aaagaaaccttgaacagtgttacacgtgcttgccacctttgcacgttgacaccaaggtgt 683

                                                                       
Query: 61  gcgtgtgcaccaaaactcctaaaattgtacatattacatacatttgttttttctatatta 120
           | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 682 gtgtgtgcaccaaaactcctaaaattgtacatattacatacatttgtttcttctatatta 623

                                                                       
Query: 121 gtcatacctctctctctctctgactctcactctctctctctctctctctctctctctgtg 180
           |||||||||||||||||||          |||||||||||||||||||||||||||    
Sbjct: 622 gtcatacctctctctctct----------ctctctctctctctctctctctctctc---- 577

                                                                       
Query: 181 tgtgtgtgtgtgtgtgtgtgtgtgtgtggtcgttcagacattccaaatatgagacacctt 240
                         ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 --------------tgtgtgtgtgtgtggtcgttcagacattccaaatatgagacacctt 531

                                                                       
Query: 241 caaggtttcaatgaagattgctgtactctcttcatccctgcaggatgtctcgcttttcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 caaggtttcaatgaagattgctgtactctcttcatccctgcaggatgtctcgcttttcag 471

                                                                       
Query: 301 ggaagtaaacccatgccagcctagcatattctgacactaagtcagtaatggagtgagcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ggaagtaaacccatgccagcctagcatattctgacactaagtcagtaatggagtgagcct 411

             
Query: 361 ag 362
           ||
Sbjct: 410 ag 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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