BAC Information

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BAC

Clone NameMSMg01-510E22
Chromosome9 (Build37)
Map Location 88,091,651 - 88,092,323
singlet/doubletsinglet
Overlap genenone
Upstream gene4922501C03Rik, LOC671706, Tbx18, LOC671731, LOC100039580, LOC384962
Downstream geneEG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510E22.T7 (MSMg01no510_e22.b1)MSMg01-510E22.TJ (MSMg01no510_e22.g1)
ACCAG583775AG583776
length869758
length of high quality
(start - end)
52 (106 - 157)673 (74 - 746)
definitionCHROMAT_FILE: MSMg01no510_e22.b1 PHD_FILE: MSMg01no510_e22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:52 2005CHROMAT_FILE: MSMg01no510_e22.g1 PHD_FILE: MSMg01no510_e22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCGCACATCCGCGGA
ATTCCTCTCTGTATTTCCTTGTTGTACAGAAGGTTGCTTCTGGTCCTTAG
ACAGTCACTCTCTTGAGGTCTTTGTACTGGCCTTACCGCTGCTCTCTGAC
CCTCAGCTTGGAGTTGTACCAGAACCATCACTTCACAGCTCTTTCCCAGT
TCCCATGCTCTCTGTGCACGTGCACCTACACAGCTTCTCCTGTCACATGT
CTTCTCTTGCTCATCCACTCAGCCTACCAATATCAGTATTCTAAGGACTA
CTTCCCTTCCAATATGTCTCATCTGTTCAGATCATCATTATCCATATTTG
TGTCTTCCTATTTTCTATCCCCACTCACATATTTTCTTTTGCTTTATTAC
CCTTTAACCCTTGTTTTTCCCACCTTCCCCTTCCTTTTTTTCCCATATAT
TCATCCTTCCACTTTCTCCTCTACCCCATTTATCTTTTCATACTCCATCT
TTTTATATATTCTTACATTTTCCTCTTTCACACCCCCTCCTTTTTCCTCT
CTCACTTTACTCCATATATTTCCTTTCACTTTCACCTCATCTAAATTCAA
TATCTCATCCAATTCTCCTCCTTACTTTCCTTTACCCCCCCCATCTTATT
TCACTCTCCTCCAACACACCATTATACCTTACCTATCTTTCCTATTCCTC
CCATATTTAAATCGCCAATTCGCATCTCTCCCCTCATATTATTCATCTAC
CCCTCTTATCCTCTCCCTAATTATAAAAATACCCATTCTTAATATTCCTC
TCTTTCTTAAATCATACAAATGATAAACCCACCACCCCTCTTCCACTCAT
ATCCCAAAACCTCCCCCTA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATAGTTTTATCTCCAGCTTGGGAAACA
TTCTCCAACCGGAGTCTTCCTCAAGTCGTATCCTCAAAGGCACGGAGTTG
GCAAGTGCTCACATTTGGTCTCCGAGCAGAGACCTGAGATGATTGCTGCC
TCTGTTCCCAGTGTGTGCCTGGAGGAGGTCTCCACACTGCTTTCAACACT
TGGTTGGATCCCCAGTGTCAACATGGGGACTTGGAGAGCTGAGATGCTCT
GTGAACATCAGAGCATCAATATCTAGTAAGGCTGGGGGGTCCTTCGAGGT
GGGCTGAATTGAATGCTGTGAGCAGGAGCAGATGTGGGGCTGGCTTCCCC
GAAGCCCCCGCCCCATTGCTTTCCCTGAACAGTCTCTATGTATTTACTTG
GATCTAATAATATTCCTACATCGTTGTATATTGATGCTGAATATATTAGT
GCCACTGAAGCTCCAGAAAGTTTTACGAAAGAAAATCTGAGTGTTCTTCT
ACTGAATGTTAAGAAAATAAAGACTATTGCCTGCCGGAAAGAAAAAAAAA
TGATTTTGCAAAGGGACAAGCATCCGTAGCAAAGGTCAACTCCATTGGGC
TTCTCTTCCTGTTGGGATTTTGCTGGGCCTTATCTCTTGCAGGTTGTGGT
AAGATGTGGGCCAACTTGAGGCACAAATTGGCTCCACGTGTGTTCCCTGT
GGTGGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_e22.g1 MSMg01no510_e22.g1 CHROMAT_FILE:
MSMg01no510_e22.g1 PHD_FILE: MSMg01no510_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:52 2005
         (673 letters)



>mm_chr9_88091451_88092523
          Length = 1073

 Score = 1239 bits (641), Expect = 0.0
 Identities = 665/673 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagttttatctccagcttgggaaacattctccaaccggagtcttcctcaagtcgtatcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 873 atagttttatctccagcttgggaaacattctccaaccggagtcttcctcaagtcgtattc 814

                                                                       
Query: 61  tcaaaggcacggagttggcaagtgctcacatttggtctccgagcagagacctgagatgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 tcaaaggcacggagttggcaagtgctcacatttggtctccgagcagagacctgagatgat 754

                                                                       
Query: 121 tgctgcctctgttcccagtgtgtgcctggaggaggtctccacactgctttcaacacttgg 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 753 tgctgcctctgttcccagtgtgtgcctggaggaggtctctacactgctttcaacacttgg 694

                                                                       
Query: 181 ttggatccccagtgtcaacatggggacttggagagctgagatgctctgtgaacatcagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 693 ttggatccccagtgtcaacatggggacttggagagctgagatgctctgtgaacgtcagag 634

                                                                       
Query: 241 catcaatatctagtaaggctggggggtccttcgaggtgggctgaattgaatgctgtgagc 300
           |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 catcaagatccagtaaggctggggggtccttcgaggtgggctgaattgaatgctgtgagc 574

                                                                       
Query: 301 aggagcagatgtggggctggcttccccgaagcccccgccccattgctttccctgaacagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aggagcagatgtggggctggcttccccgaagcccccgccccattgctttccctgaacagt 514

                                                                       
Query: 361 ctctatgtatttacttggatctaataatattcctacatcgttgtatattgatgctgaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctctatgtatttacttggatctaataatattcctacatcgttgtatattgatgctgaata 454

                                                                       
Query: 421 tattagtgccactgaagctccagaaagttttacgaaagaaaatctgagtgttcttctact 480
           ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 453 tattagtgccactgaagcttcagaaagttttatgaaagaaaatctgagtgttcttctact 394

                                                                       
Query: 481 gaatgttaagaaaataaagactattgcctgccggaaagaaaaaaaaatgattttgcaaag 540
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 393 gaatgttaagaaaataaagactattgcctgctggaaagaaaaaaaaatgattttgcaaag 334

                                                                       
Query: 541 ggacaagcatccgtagcaaaggtcaactccattgggcttctcttcctgttgggattttgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ggacaagcatccgtagcaaaggtcaactccattgggcttctcttcctgttgggattttgc 274

                                                                       
Query: 601 tgggccttatctcttgcaggttgtggtaagatgtgggccaacttgaggcacaaattggct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tgggccttatctcttgcaggttgtggtaagatgtgggccaacttgaggcacaaattggct 214

                        
Query: 661 ccacgtgtgttcc 673
           |||||||||||||
Sbjct: 213 ccacgtgtgttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)