Query= MSMg01no510_h21.b1 MSMg01no510_h21.b1 CHROMAT_FILE:
MSMg01no510_h21.b1 PHD_FILE: MSMg01no510_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:05 2005
(673 letters)
>mm_chr9_43234729_43235796
Length = 1068
Score = 1201 bits (621), Expect = 0.0
Identities = 660/680 (97%), Gaps = 12/680 (1%)
Strand = Plus / Plus
Query: 1 aaacaattttacaacgctcggtaatttgtacatagttctggggtgcagtatgacatctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 aaacaattttacaacgctcggtaatttgtacatagttctggggtgcagtatgacatctca 253
Query: 61 gtccttgtgtacagcgtgtcataatcggaatgggtaattggcagatccatcacctcaaac 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 254 gtccttgtgtacagcgtgtcataatcagaatgggtaattggcagatccatcacctcaaac 313
Query: 121 atttatttgttctctgtgatggggacatgcagaacccttctgctgat-------gttcaa 173
||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 314 atttatttgttctctgtgatggggacatgcagaacccttctgctgatgtgaaacgttcaa 373
Query: 174 ttaattgttgttaattaattaattgccttagctgctcctctgggctgcggaacgctgggc 233
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 374 ttaattgttgttaattaattaattgccttagctgctcctctgggctgcggaacactggga 433
Query: 234 gttactctccgatgacctgtgtctggtaactcttccctatcacttccagctccgctttcc 293
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 434 gttactctccgaggacctgtgtctggtaactcttccctatcacttcca-----gctttcc 488
Query: 294 cttttatggctctcgttcgctggcccttgctgggcttgctttctttgtgtgcttgctcag 353
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cttttatggctcttgttcgctggcccttgctgggcttgctttctttgtgtgcttgctcag 548
Query: 354 ttaccaagttagctagtattccctggcaagcactgagcagccagagtatgggccagtttg 413
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 549 ttaccaagttagctcgtattccctggcaagcactgggcagccagagtatgggccagtttg 608
Query: 414 ttgaatgaagggactgtctgaatacaatcctctggggaaggaactagggggctccagcct 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ttgaatgaagggactgtctgaatacaatcctctggggaaggaactagggggctccagcct 668
Query: 474 ccagttgaacccccgacatggataattgagagagagaattcttcatccccggacagttga 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ccagttgaacccccgacatggataattgagagagagaattcttcatccccggacagttga 728
Query: 534 gaattcattttaaatgcagtctggtttctcaggacaaagcattgttagctgccttagact 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gaattcattttaaatgcagtctggtttctcaggacaaagcattgttagctgccttagact 788
Query: 594 tcctggagtanggaaataaaaaaaataagataaaataaagccatgtttttcctctttcca 653
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 tcctggagtagggaaataaaaaaaataagataaaataaagccatgtttttcctctttcca 848
Query: 654 gagtgcttccccctttcccc 673
||||||||||||||||||||
Sbjct: 849 gagtgcttccccctttcccc 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1068
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1058
Effective search space: 701454
Effective search space used: 701454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no510_h21.g1 MSMg01no510_h21.g1 CHROMAT_FILE:
MSMg01no510_h21.g1 PHD_FILE: MSMg01no510_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:05 2005
(323 letters)
>mm_chr9_43368175_43368897
Length = 723
Score = 609 bits (315), Expect = e-179
Identities = 321/323 (99%)
Strand = Plus / Minus
Query: 1 ttgtcctagacaggcctcgggaggttgagcttgggaactgaggagtcagcatcctagaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ttgtcctagacaggcctcgggaggttgagcttgggaactgaggagtcagcatcctagaca 464
Query: 61 aattttccggatcattcctgtatttgcagaggtcagagagtcactagatagtccttccgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aattttccggatcattcctgtatttgcagaggtcagagagtcactagatagtccttccgt 404
Query: 121 aggctctgtgctcagcatgtgacttgcatttcagggagatgggtgactattctcccaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aggctctgtgctcagcatgtgacttgcatttcagggagatgggtgactattctcccaggg 344
Query: 181 tggaaaaggatgatattgacagttccaacagggactaggatccagccacaaacaaatgct 240
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 343 tggaaaaggatgatattgacagttccgacagggactgggatccagccacaaacaaatgct 284
Query: 241 gtcagaactcatgggagcatctaatctgggcgaatgggaggagtttgggagtctgagagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gtcagaactcatgggagcatctaatctgggcgaatgggaggagtttgggagtctgagagt 224
Query: 301 atttcaattgagctttgacttaa 323
|||||||||||||||||||||||
Sbjct: 223 atttcaattgagctttgacttaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
