BAC Information

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BAC

Clone NameMSMg01-510N18
Chromosome9 (Build37)
Map Location 84,679,693 - 84,680,111
singlet/doubletsinglet
Overlap genenone
Upstream geneElovl4, Ttk, EG546150, Bckdhb, EG666669
Downstream geneLOC666672, BC023892, Ibtk, 4933431K14Rik, EG434426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510N18.T7 (MSMg01no510_n18.b1)MSMg01-510N18.TJ (MSMg01no510_n18.g1)
ACCAG584195AG584196
length757757
length of high quality
(start - end)
429 (327 - 755)418 (324 - 741)
definitionCHROMAT_FILE: MSMg01no510_n18.b1 PHD_FILE: MSMg01no510_n18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:33 2005CHROMAT_FILE: MSMg01no510_n18.g1 PHD_FILE: MSMg01no510_n18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCGCGGA
ATTCTCCCCATTTCCTAAATCAAGAAGAAAAGACCTGCCAAAAGGAGATG
TGGATGAGTATGAGAAAAGGTCAAATCGAGTGTCTACCGGAGGATCCTGC
AATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAATTGTGA
TACATTTACACAATGGATTATTTTTCAGCTATTAAAAAGAATGAATTTAG
GAAATTCCTGGGCAAATGGTTGGACCTGGAGGACATCATCCTGAGTGAGG
TAACCCAATCAAAAAAGAACTCAAATGAAATGTACTCACTGATAAGTGGA
TATTAGCCAAGAAACTTAGTATAGCGAGATATAAGGTACAAGATGCAAAA
CACATGAAACTGAAGAAGAATGAAGACCAAAGTGTGGACACTTTACTCCT
TCTTAGAATTGGAAACAATCACCCATGGAAGGAGTTACAGAGACAAAGTT
TGGAGCTGAGACAAAAGGATGGACCATCTAGAGACTGCCATATCCAGGGA
TCCATCCCATAATTAGCCTCCAAACGATGACACCATGGCATACACTAGCA
AGCCTTTGTTGCAAGGACCGTGATATAGCTGTCCCTTGTGAGACTAGGCC
GGGGCCC
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCGCAACAATGCTGNACAGANGGAAGCTGTTGACAAGG
TGTTCAGTTATAGTCCTTACAGAAGCATCATTGTTCGAAAGAAAAGAATG
TAACAGTCTGAAGTAAAATGCTGAGATCGTCTCTCTGCAGAAGGTAACAA
CACCTGGAGTTGTAATTGTGCCCCATGATGCATGTGATAAGGCTCCCCAG
TAAACAATGGGCTTCCTGTGTTCACATAGTTCTCATTGGAAATGGAAGAC
AAGGCATTTCACCCTGTNCTTGTGAATCCTGCTGAGAGCCAGGCAAATAG
ATTTGTTGCCTCACTACCTAAAACTTCCCACTCCTCCTAGCTTCCTTTTA
GTGGACTTGATATTTAAGCCTTCTACAGAGAAGGCTTATTTACATCCTTA
TCTGTCACCATTATATTTTAACCACGGTAAATCAATATCGGGTTGTTTTT
TTTTTTTTTAAATCTCCATCTAACTGTTGTTGTCAGGAAATAGGTTCAGT
GCAATTTAGATTTTGAGTTAATTTAAGTGTAGGCATATTAAGATCATAAA
ATACCCCCAAATTACAAAGCAAATATCTCCTTTTCATCCCATCTAGCTAT
AGTTCCTGGGTTCTGAAGTCTTGCCTAAGGTAAATCTTACTCCTTACTCT
TTTAATTTTCTGTTAACTTCTAAGTCTTTGTGAACATCCAGAAAATCATC
TCTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_n18.g1 MSMg01no510_n18.g1 CHROMAT_FILE:
MSMg01no510_n18.g1 PHD_FILE: MSMg01no510_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:33 2005
         (418 letters)



>mm_chr9_84679493_84680311
          Length = 819

 Score =  779 bits (403), Expect = 0.0
 Identities = 415/419 (99%), Gaps = 1/419 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaatcctgctgagagccaggcaaatagatttgttgcctcactacctaaaacttcccactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaatcctgctgagagccaggcaaatagatttgttgcctcactacctaaaacttcccactc 260

                                                                       
Query: 61  ctcctagcttccttttagtggacttgatatttaagccttctacagagaaggcttatttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctagcttccttttagtggacttgatatttaagccttctacagagaaggcttatttac 320

                                                                       
Query: 121 atccttatctgtcaccattatattttaaccacggtaaatcaatatcgggttgtttttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atccttatctgtcaccattatattttaaccacggtaaatcaatatcgggttgtttttttt 380

                                                                       
Query: 181 tttttt-aaatctccatctaactgttgttgtcaggaaataggttcagtgcaatttagatt 239
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttttaaatctccatctaactgttgttgtcaggaaataggttcagtgcaatttagatt 440

                                                                       
Query: 240 ttgagttaatttaagtgtaggcatattaagatcataaaatacccccaaattacaaagcaa 299
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ttgagttaatttaagtgtaggcatattaagatcataaaacacccccaaattacaaagcaa 500

                                                                       
Query: 300 atatctccttttcatcccatctagctatagttcctgggttctgaagtcttgcctaaggta 359
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtctccttttcatcccatctagctatagttcctgggttctgaagtcttgcctaaggta 560

                                                                      
Query: 360 aatcttactccttactcttttaattttctgttaacttctaagtctttgtgaacatccag 418
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 aatcttactccttactcttttaattttctgttaacttctaagtcttcgtgaacatccag 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 819
Length adjustment: 9
Effective length of query: 409
Effective length of database: 810
Effective search space:   331290
Effective search space used:   331290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)