BAC Information

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BAC

Clone NameMSMg01-510O18
Chromosome9 (Build37)
Map Location 34,315,945 - 34,509,917
singlet/doubletdoublet
Overlap geneKirrel3
Upstream geneLOC100042343
Downstream geneSt3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik, Rpusd4, EG434394, Cdon, Ddx25, Pus3, EG627480, LOC100042442, Svs7, Gm846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510O18.T7 (MSMg01no510_o18.b1)MSMg01-510O18.TJ (MSMg01no510_o18.g1)
ACCAG584243AG584244
length749744
length of high quality
(start - end)
614 (73 - 686)618 (83 - 700)
definitionCHROMAT_FILE: MSMg01no510_o18.b1 PHD_FILE: MSMg01no510_o18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:37 2005CHROMAT_FILE: MSMg01no510_o18.g1 PHD_FILE: MSMg01no510_o18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,315,945 - 34,316,558)(34,509,300 - 34,509,917)
sequence
CCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACATCTTGTTCTGCAGGCAGGAAAAGGAGACTGTGAACCACACTG
GGCATAGCTTGAGCATATAAGACTTTAAAGCCTGTCCCAACAATGACCCA
CTTCCTCCAACAAGGGCACACCTACTCCAACAAAGCCACAACTCCTAATG
TGCCATACTCTCTATGGGTCTATGAGGGGCCATTTTATTCAAACCACTAC
AACCAGGTAGTTATTTAAATAGTATTAATGTTAGCCTATAGAGAGCTAAA
TATACTACATTCATTTCTAAAAATTATAACTTCTTGGCGATCCTTAAGTT
GTCCTTCTTTTATCCAAATTGGCTCTTGTCTAGTCCCAAGTTCACTTTCT
TAACACCACTCTGATAGCAAATTTTAAGAGTAACAACAAATATGTACCTG
TAGGCCATTCTATTTTCTGCTCTATGATGCTCTCTTGTGTACACCTTGAT
GGCTTCATTGTAGTATTCGGAAAAGCAAACTCATGATTTGTTTTCCCATT
GTCTGAATTCTGTCAGGGGACATCATCATATTCCTAACACTCAGCTCTTC
TATTAGAGCCCCTTTCCTATCCCATACCCGGTCATTTCTCTATCATGACA
CCTATTTCTCTGGATCTTTTCATTTTTCTTCCATTGCCTGAGTAAGCTTC
TCATCTTCCCAACTTGGAACATCTCATCCAGTCCCCCATATTCCCCAAG
CATGAAGTCGGAGGTCTGGGGNNGTGGGTTTTCTCACGAGANGAANNANA
GAAGGATTTCAGAAAAACGGGCAAAANGNGGNTAACGTTACATGGCTGGT
AATTCGGATGTTGAGACAAAGTTCAGGCCTAAGCAATTGTCAGAAGCCTA
TCGAAGAGAAAGAACCACAGGCTACTTTAACTGGTGACAATTTCTCTAGT
GTCCTTGTCAGCTAAAGGATGAAGCCCAAATGATCATGACATTTTTCGTG
ATTGGCTCCCTGAAGGTCTCTTTAGTCACACAATGATATGGTTCTTCATA
AGAGCCTACCATTCTTTCTTTTCATTCTTCTTTTATTCTACCAGTCTCCT
CATCTGTCTATCGTCCATGTAACCATCCACCCACCCACCCCCTTATTTCC
ACAAATATTAAATGCCAGGTATGCATTAGCACTGTTTTCCAGTTTGTAAA
TTAGTTGGCTAGGTTGAGGATATTATGAATGGATGATTTGGAAGGTGTAG
AGCAGATTGGCTGTAGAAAGATATATACAAGAGAGATTCAAGTGAGCGCA
AGGAAGGGCGGGGACAAAAGGAAATACCAAGATGGAGTGTGGCAGGACCT
TGGTTGAAAGATTAGATGCCAAAGGCAGGTTAAGTCCTTGAGGCATGTGA
CATTTGGTCAGAGACGTGAATATGCGAACTTGTCCCTCCAAATGGAAGAA
TGAGGCTAAGTAAGGAGAGTTCCAGGCAGAGAGAACGGCAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_o18.b1 MSMg01no510_o18.b1 CHROMAT_FILE:
MSMg01no510_o18.b1 PHD_FILE: MSMg01no510_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:37 2005
         (614 letters)



>mm_chr9_34315745_34316758
          Length = 1014

 Score = 1187 bits (614), Expect = 0.0
 Identities = 614/614 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggaaaaggagactgtgaaccacactgggcatagcttgagcatataagactttaaagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggaaaaggagactgtgaaccacactgggcatagcttgagcatataagactttaaagcc 260

                                                                       
Query: 61  tgtcccaacaatgacccacttcctccaacaagggcacacctactccaacaaagccacaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcccaacaatgacccacttcctccaacaagggcacacctactccaacaaagccacaac 320

                                                                       
Query: 121 tcctaatgtgccatactctctatgggtctatgaggggccattttattcaaaccactacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctaatgtgccatactctctatgggtctatgaggggccattttattcaaaccactacaa 380

                                                                       
Query: 181 ccaggtagttatttaaatagtattaatgttagcctatagagagctaaatatactacattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaggtagttatttaaatagtattaatgttagcctatagagagctaaatatactacattc 440

                                                                       
Query: 241 atttctaaaaattataacttcttggcgatccttaagttgtccttcttttatccaaattgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttctaaaaattataacttcttggcgatccttaagttgtccttcttttatccaaattgg 500

                                                                       
Query: 301 ctcttgtctagtcccaagttcactttcttaacaccactctgatagcaaattttaagagta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcttgtctagtcccaagttcactttcttaacaccactctgatagcaaattttaagagta 560

                                                                       
Query: 361 acaacaaatatgtacctgtaggccattctattttctgctctatgatgctctcttgtgtac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaacaaatatgtacctgtaggccattctattttctgctctatgatgctctcttgtgtac 620

                                                                       
Query: 421 accttgatggcttcattgtagtattcggaaaagcaaactcatgatttgttttcccattgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accttgatggcttcattgtagtattcggaaaagcaaactcatgatttgttttcccattgt 680

                                                                       
Query: 481 ctgaattctgtcaggggacatcatcatattcctaacactcagctcttctattagagcccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgaattctgtcaggggacatcatcatattcctaacactcagctcttctattagagcccc 740

                                                                       
Query: 541 tttcctatcccatacccggtcatttctctatcatgacacctatttctctggatcttttca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttcctatcccatacccggtcatttctctatcatgacacctatttctctggatcttttca 800

                         
Query: 601 tttttcttccattg 614
           ||||||||||||||
Sbjct: 801 tttttcttccattg 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no510_o18.g1 MSMg01no510_o18.g1 CHROMAT_FILE:
MSMg01no510_o18.g1 PHD_FILE: MSMg01no510_o18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:38 2005
         (618 letters)



>mm_chr9_34509100_34510117
          Length = 1018

 Score = 1149 bits (594), Expect = 0.0
 Identities = 612/618 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taacgttacatggctggtaattcggatgttgagacaaagttcaggcctaagcaattgtca 60
           |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 818 taacgttacacggctggtaattcggatggtgagacaaagttcaggcctaagcaattgtca 759

                                                                       
Query: 61  gaagcctatcgaagagaaagaaccacaggctactttaactggtgacaatttctctagtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 gaagcctatcgaagagaaagaaccacaggctactttaactggtgacaatttctctagtgt 699

                                                                       
Query: 121 ccttgtcagctaaaggatgaagcccaaatgatcatgacatttttcgtgattggctccctg 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 698 ccttgtcagctaaaggatgaagcccaaatgatcatgacattttacgtgattggctccctg 639

                                                                       
Query: 181 aaggtctctttagtcacacaatgatatggttcttcataagagcctaccattctttctttt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 638 aaggtctctttagtcacacaatgatatggttcttcataagagcctaccattctttcattt 579

                                                                       
Query: 241 cattcttcttttattctaccagtctcctcatctgtctatcgtccatgtaaccatccaccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cattcttcttttattctaccagtctcctcatctgtctatcgtccatgtaaccatccaccc 519

                                                                       
Query: 301 acccacccccttatttccacaaatattaaatgccaggtatgcattagcactgttttccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 acccacccccttatttccacaaatattaaatgccaggtatgcattagcactgttttccag 459

                                                                       
Query: 361 tttgtaaattagttggctaggttgaggatattatgaatggatgatttggaaggtgtagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tttgtaaattagttggctaggttgaggatattatgaatggatgatttggaaggtgtagag 399

                                                                       
Query: 421 cagattggctgtagaaagatatatacaagagagattcaagtgagcgcaaggaagggcggg 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 398 cagattggctgtagaaagatatatacaagagagattcaagtgagcgcaaggaagggtggg 339

                                                                       
Query: 481 gacaaaaggaaataccaagatggagtgtggcaggaccttggttgaaagattagatgccaa 540
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 338 gacaaaaggaaataccaagatggagtgtggcaggaccttggttggaagattagatgccaa 279

                                                                       
Query: 541 aggcaggttaagtccttgaggcatgtgacatttggtcagagacgtgaatatgcgaacttg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aggcaggttaagtccttgaggcatgtgacatttggtcagagacgtgaatatgcgaacttg 219

                             
Query: 601 tccctccaaatggaagaa 618
           ||||||||||||||||||
Sbjct: 218 tccctccaaatggaagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)