BAC Information

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BAC

Clone NameMSMg01-511C10
Chromosome9 (Build37)
Map Location 38,966,818 - 38,967,305
singlet/doubletsinglet
Overlap geneOlfr942-ps1
Upstream geneOlfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27
Downstream geneOlfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511C10.T7 (MSMg01no511_c10.b1)MSMg01-511C10.TJ (MSMg01no511_c10.g1)
ACCAG584415AG584416
length717739
length of high quality
(start - end)		479 (45 - 523)545 (77 - 621)
definitionCHROMAT_FILE: MSMg01no511_c10.b1 PHD_FILE: MSMg01no511_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:55 2005CHROMAT_FILE: MSMg01no511_c10.g1 PHD_FILE: MSMg01no511_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACTGAGGAATATCAAATGGCTGAGAAGCACCTAAAGAAATGTT
CAACATCCTTAGTCATCAGGGAAATGCAAATCAAAATAACCCTGTGATTC
CACCACAAAACAGTCAGAATGGCTAAGATCAAACTCAGGTAACAGCAAAT
ACTGGGAACTTTGTGGAGAAAAAGGAACATTCCTCCATTGCTGGTGGGAT
TGCAAGCTGTTACATCAACTCTGGAAATCAGTTTCAAGGTTCATCAGAAA
ATTGCAAATAGTACTACCTTAGGACCCACTAATATCACTCTTGGGCATAT
ATGCAGAAGATGTTCCAATATATTATAATGACTCATGTGCCACTATGTTC
ACTGCAGCCTGATTTATAGTAGCCAGGAGCTAGAAAGAACCCAGATGTCC
TTCAACAGAGGAATGGATACATAAAAAAAGGGTACATTTTTACAATGCAG
TATTACTCACCTATTAAAATTAATGAATTCATGAAATTCTTAGGCAAATG
GATGGAACTAGAAAATGTCATCCTGAAAGAGTTAACCCAATCATAAAAGG
ACACACATACTATCCACTCACTGACAAGTCACAGAAGCTTGGAATACCCC
AGATACTATTCATAAAACATATGAAACTCAAGAAGAACGAAAACCAAAGT
GTGGATACTTCAATCAN

TCATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGACACAAGAAACACAGCACA
ACCAAGATAAGGGACCAATATGTACTGAAGGCTTTTTCAGAGAAATGTTG
ATGAACAAGCCAACAATAATGAAGTAAAGAGTGAGAAAATTCAAGTTGGG
GCAACATTGATAAATGTTCCAAAGCATAAAATAAAAAAATCTTTGAAATA
AGAACTATAAATTAATGCATGAATTGAATAGAATTAAAAGTAACTAAGTA
AAATATTTAATAATAATGAAAAATCAATAAAAAGAAAACTTTAATGAAAA
AAAGAACTTTAACATGAGTGAAGAAGCTTTCTGGGGTAAGGAGAACATAG
AAATGGTGGTTGACCATGTCTATGTTACTAAGCTGTACACAGATCATGTA
ACCTGTGTGAGCTGATATAAAAACTACACTAATAATATGTACTTCTGAAA
TCTGGAAACTGGAAACCTGAGAGAATATGGTCATGTTGTAAACAAAAGTG
TTAAAAATGGCAACATAGGGGTCATATGAAAATGGAGATAACAAGTGACA
CTTTGCAATCATGAAATTGAGGACAAAATATAGTCGAGTCATTTACTGAG
GGCGAGAGATAGAGCTGTCTTCTATAACATAGTTCTAAAGATGTTTTTGG
ATAACGACCATGGAAAGGCCGAGTTAAGTGAAGTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_c10.g1 MSMg01no511_c10.g1 CHROMAT_FILE:
MSMg01no511_c10.g1 PHD_FILE: MSMg01no511_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:56 2005
         (545 letters)



>mm_chr9_38966361_38967305
          Length = 945

 Score =  928 bits (480), Expect = 0.0
 Identities = 486/488 (99%)
 Strand = Plus / Minus

                                                                       
Query: 58  ttttcagagaaatgttgatgaacaagccaacaataatgaagtaaagagtgagaaaattca 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 ttttcagagaaatgttgatgaacaagccaacaataatgaagtaaagagtgagaaaattca 886

                                                                       
Query: 118 agttggggcaacattgataaatgttccaaagcataaaataaaaaaatctttgaaataaga 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 agttggggcaacattgataaatgttccaaagcataaaataaaaaaatctttgaaataaga 826

                                                                       
Query: 178 actataaattaatgcatgaattgaatagaattaaaagtaactaagtaaaatatttaataa 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 actataaattaatgcatgaattgaatagaattaaaagtaactaagtaaaatatttaataa 766

                                                                       
Query: 238 taatgaaaaatcaataaaaagaaaactttaatgaaaaaaagaactttaacatgagtgaag 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 765 taatgaaaaatcaataaaaagaaaactttaatgaaaaaaagaactttaacatgagtggag 706

                                                                       
Query: 298 aagctttctggggtaaggagaacatagaaatggtggttgaccatgtctatgttactaagc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 aagctttctggggtaaggagaacatagaaatggtggttgaccatgtctatgttactaagc 646

                                                                       
Query: 358 tgtacacagatcatgtaacctgtgtgagctgatataaaaactacactaataatatgtact 417
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 645 tgtacacagatcatgtaacctgtgtgagctgatgtaaaaactacactaataatatgtact 586

                                                                       
Query: 418 tctgaaatctggaaactggaaacctgagagaatatggtcatgttgtaaacaaaagtgtta 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tctgaaatctggaaactggaaacctgagagaatatggtcatgttgtaaacaaaagtgtta 526

                                                                       
Query: 478 aaaatggcaacataggggtcatatgaaaatggagataacaagtgacactttgcaatcatg 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aaaatggcaacataggggtcatatgaaaatggagataacaagtgacactttgcaatcatg 466

                   
Query: 538 aaattgag 545
           ||||||||
Sbjct: 465 aaattgag 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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