BAC Information

Click to search

BAC

Clone NameMSMg01-511I06
Chromosome9 (Build37)
Map Location 86,667,705 - 86,668,149
singlet/doubletsinglet
Overlap geneSnap91
Upstream geneEG434426, 9330154J02Rik, Tpbg, 2610018I03Rik, Pgm3, Rwdd2, Mod1, Prss35
Downstream geneC030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706, Tbx18, LOC671731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511I06.T7 (MSMg01no511_i06.b1)MSMg01-511I06.TJ (MSMg01no511_i06.g1)
ACCAG584693AG584694
length713723
length of high quality
(start - end)
445 (63 - 507)367 (74 - 440)
definitionCHROMAT_FILE: MSMg01no511_i06.b1 PHD_FILE: MSMg01no511_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:24 2005CHROMAT_FILE: MSMg01no511_i06.g1 PHD_FILE: MSMg01no511_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGCCCAACAAACATTTGCTGTGAAGGCTAACACAGAAGCAATATT
CCTTTCATATATAGATATTTTATGTTAAGTAACAATGGACCATGCTTAAG
GCATAAACCTTGGATAGGGCTTTCCAAGAAGTATCCTGGGTAGCCTCAAA
CAAAACTGTTAACACTATGTACAGTACAGATACCCTACTTTCTGGCATCC
ACGTGATCTAGACTCTAATCTTAGAAACTGCAAACCTGCCAAATGTCGCC
TAAGAACCATCCAGTGAGCTCTCTTAATGCTCCTATAATTCCTCTAAGAC
AGTGGCTTCAAAGCCACCCAAACTATACACGGTGCCGTGAAGTGTGACAC
TCCCTTAGGGAAGTCTACACCTACTCTCTGAGTGGTGTCTTTCTTTCTGA
GCAGCTTTCTTTTAACCTTCTAGTTTCATCTTTATTGCCCACTAATTCTA
CTTTACACCGGCTAGTCCATAAACATGTTTTGTTTTCTTCAAGCCAGAAA
ACCCAGTCTGGCCTGAAATCCTAAAACCCGAGGAGAACTCATGCTGCTGA
CGCCACAATTGTGTAGGGTGCCTCTTGCCTCTGTACCTCACACCATGCAA
CATATTGACAGCCTTATATTTACGAGTAAATGCATGGTGCTGCGAACTCT
ATACAACTGACCG
GCATGCTATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGA
ATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATC
ATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGA
TTTTCTTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGT
CAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATT
TTATTGAGGATTTTTGCATCGATATTCATAAGATAAATTGGTCTGAAGTT
CTCTATCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGG
CTTCATAAAATGAGTTGGGTAGAGCACCTTCCACTTCTATTTTGTGAAAT
AGTTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGGTATAACTC
TGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAA
TAACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATGGTCAACT
TGATCCTGATTCATCTTTGGTACCTGGTATCTGTCCAGAAATTTGCCCAT
TTTTTCCAGGCTTTCCTGTTTTGTTGAGTATAGCCTTTTGCCATAAGATC
TGACGCGTGTTTTTGATTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_i06.b1 MSMg01no511_i06.b1 CHROMAT_FILE:
MSMg01no511_i06.b1 PHD_FILE: MSMg01no511_i06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:24 2005
         (445 letters)



>mm_chr9_86667505_86668349
          Length = 845

 Score =  814 bits (421), Expect = 0.0
 Identities = 439/445 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaacatttgctgtgaaggctaacacagaagcaatattcctttcatatatagatatttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaacatttgctgtgaaggctaacacagaagcaatattcctttcatatatagatatttta 260

                                                                       
Query: 61  tgttaagtaacaatggaccatgcttaaggcataaaccttggatagggctttccaagaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttaagtaacaatggaccatgcttaaggcataaaccttggatagggctttccaagaagt 320

                                                                       
Query: 121 atcctgggtagcctcaaacaaaactgttaacactatgtacagtacagataccctactttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcctgggtagcctcaaacaaaactgttaacactatgtacagtacagataccctactttc 380

                                                                       
Query: 181 tggcatccacgtgatctagactctaatcttagaaactgcaaacctgccaaatgtcgccta 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggcatccatgtgatctagactctaatcttagaaactgcaaacctgccaaatgtcgccta 440

                                                                       
Query: 241 agaaccatccagtgagctctcttaatgctcctataattcctctaagacagtggcttcaaa 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 agaaccatccagtgagctctcttaatgctcctagaattcctctaagacagtggcttcaaa 500

                                                                       
Query: 301 gccacccaaactatacacggtgccgtgaagtgtgacactcccttagggaagtctacacct 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccacccaaactatacacggggccgtgaagtgtgacactcccttagggaagtctacacct 560

                                                                       
Query: 361 actctctgagtggtgtctttctttctgagcagctttcttttaaccttctagtttcatctt 420
           |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 561 actctctgagtggtgtctttctttctgagcagttttcttttaaccttccagtttcatctt 620

                                    
Query: 421 tattgcccactaattctactttaca 445
           ||||||||| |||||||||||||||
Sbjct: 621 tattgcccattaattctactttaca 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)