Query= MSMg01no511_j03.b1 MSMg01no511_j03.b1 CHROMAT_FILE:
MSMg01no511_j03.b1 PHD_FILE: MSMg01no511_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:28 2005
(172 letters)
>mm_chr9_53874614_53875184
Length = 571
Score = 296 bits (153), Expect = 5e-85
Identities = 165/171 (96%), Gaps = 5/171 (2%)
Strand = Plus / Minus
Query: 4 ggaattcctttc--cttttctctatggtccgcatggaaactgcaggcccaatctcaagag 61
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggaattcctttccac---tctctatggtccgcatggaaactgcaggcccaatctcaagag 315
Query: 62 gatttgcgaaggaatcaataaattgttagatgacaagatcctctgaacagctttcccctc 121
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 314 gatttgcgaaggaatcaataaattgttagacgacaagatcctctgaacagctttcccctc 255
Query: 122 tcttggactttgctgcttcgaagttagaatattcaacctcatccagtgaga 172
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tcttggactttgctgcttcgaagttagaatattcaacctcatccagtgaga 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 571
Length adjustment: 8
Effective length of query: 164
Effective length of database: 563
Effective search space: 92332
Effective search space used: 92332
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no511_j03.g1 MSMg01no511_j03.g1 CHROMAT_FILE:
MSMg01no511_j03.g1 PHD_FILE: MSMg01no511_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:28 2005
(449 letters)
>mm_chr9_53697443_53698288
Length = 846
Score = 795 bits (411), Expect = 0.0
Identities = 439/449 (97%), Gaps = 3/449 (0%)
Strand = Plus / Plus
Query: 1 tccacattgcaaacagctagtgataggggtgatgacgtgaaatcacattttcatagcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccacattgcaaacagctagtgataggggtgatgacgtgaaatcacattttcatagcttc 260
Query: 61 acacgtcgagtagtgaagatagctatttgttaaagctggtctattactcttgctttatga 120
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 acatgtcgagtagtgaagatagctatttgttaaaactggtctattactcttgctttatga 320
Query: 121 tgttctgaacatatgattgagacatttataaagaggtaaaagatggatttaaaatcccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttctgaacatatgattgagacatttataaagaggtaaaagatggatttaaaatcccac 380
Query: 181 accactgcaccaaaagtaggccggaaacaagagctttcatatccctgtgttgttcattta 240
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accactacatcaaaagtaggccggaaacaagagctttcatatccctgtgttgttcattta 440
Query: 241 aattggcagccaaaggagcagagcccttgctaccatatttctatgctccccccccccccg 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 aattggcagccaaaggagcagagcccttgctaccatatttctatgc-ccccccccccc-- 497
Query: 301 agtacaaatcggctggaaacctttggagcttgtccctttgagatgtctcaccagtgacat 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agtacaaattggctggaaacctttggagcttgtccctttgagatgtctcaccagtgacat 557
Query: 361 cacagtgattgtcacttccctcagactacattaggccctgcccagagttcaggagctcag 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 558 cacagtgattgtcacttccctcagactacattaggccctgcccagagtccaggagctcag 617
Query: 421 acagcctgggagacagctggaggtggaga 449
|||||| ||||||||||||||||||||||
Sbjct: 618 acagccggggagacagctggaggtggaga 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 846
Length adjustment: 10
Effective length of query: 439
Effective length of database: 836
Effective search space: 367004
Effective search space used: 367004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
