BAC Information

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BAC

Clone NameMSMg01-511J08
Chromosome9 (Build37)
Map Location 118,426,664 - 118,427,021
singlet/doubletsinglet
Overlap geneGolga4
Upstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik, Eomes
Downstream geneItga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511J08.T7 (MSMg01no511_j08.b1)MSMg01-511J08.TJ (MSMg01no511_j08.g1)
ACCAG584745AG584746
length718734
length of high quality
(start - end)
414 (71 - 484)352 (78 - 429)
definitionCHROMAT_FILE: MSMg01no511_j08.b1 PHD_FILE: MSMg01no511_j08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:29 2005CHROMAT_FILE: MSMg01no511_j08.g1 PHD_FILE: MSMg01no511_j08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTAACTTCTGTCGCCATACCACTATCATTTTCCAAAGACCGCGGAAT
TCTGCCTGTTTCCCCATGTGTACATTACATGCATCCCTGCTGCCCACACC
CTGGAACTGGAGTTACAGATGGTTGTGAACCACCATGTGGGTGCTGGGAA
CCTTACTCTGGTTCTCTGCAAGAGCAACCAGTGCTCACTCACTCTCTCTT
GCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTG
TCTGTCTCTGTCTGTCTCTCTATGTTTGTGTGTGCATTTGAATGTATACC
ACATGTGCGTGGTGTGTGAAGAGGCCGGAAAAGAGCATGAGATCTCCTGG
AGCTGGAGTGACAGGGGACTGTGAGCTGCTTGTGTGGGTTCTGGGAACTA
AACCCTCGCCATCTACGAGGGCAGCAAGCACTCTTAATCACTGATCCATG
GCTCCAGCCCCTCTGCTTACATCTGATGCAAATATGAGCAGATAATAATT
AGAGCACAACGCCCTTTCCTTGGCTAATGACCATCACGTTGGTATGAAGG
CCTTGGTGTTCTCACGCCAGGAATGAAGATGACCCATACCCTAAAGGTCA
CCATGGAGAATTTCAGTGACCCTGCTTTCTTCCCACGAGGCGCCATGACC
ATTGGGGCATTTTCCTCCATGATGTACAGGAATTCATGTGATTCATACAT
GAGCCGGTTCTTGTACCA
TACAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAGCACAGCTCCCCCACTATT
CTTTGTGAGAGATGGCAATCAGATTTGTGAATAAAAATAATAAAACGAAA
TTTAAAAGTTTCTTGGAATTAGTGATGGTTTCTCAGGGAATTTCCGAGAC
GCCCTTGGCAAAGCTGCTGGCTGTAGAAGCAGGCCTGCTATGTAGAGCCT
TCGCCTGGACAACGTGTGGTCCCATCATCCCTTCTTATGTGTCATAGACA
CAGACATAGAAAAAAAGATTTTACAGTGTTAACTGGCCAGACCTGCCCCC
CCCCCCCCCCCCGGAGCTCCCGGGGACTGGACCACCAACTAAAGAATATG
CATGGAGGGACCCATGGCTCTGGCTGCATAAGTGGCAGAAGATGGGCTTG
TTGAACATCAGTTGGAGGAGTGGACCTTGGGCCTGAGGGTGTTCGATGCC
CCAGTGTATGGGAACGCAAGGGGGCAGACAAATTTGGTATGCCTGTGGTC
GTCTGGCTAGCTGTCGCTTAACTTGGAATGGCAAGCTCCAAGCTCTGAGC
GAGATCCTGCTTCATTAGATAGAGTGGAGAGCAGTCACGAAAGACAACTG
AGGTTAACTTACCTATGCAAAGGAATTCTTGAAAATAAAATTTTGGGATA
TATTCAAATTCCTGATTTATTGCCATTTTTGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_j08.g1 MSMg01no511_j08.g1 CHROMAT_FILE:
MSMg01no511_j08.g1 PHD_FILE: MSMg01no511_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:29 2005
         (352 letters)



>mm_chr9_118426464_118427213
          Length = 750

 Score =  650 bits (336), Expect = 0.0
 Identities = 350/360 (97%), Gaps = 10/360 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttagcacagctcccccactattctttgtgagagatggcaatcagatttgtgaataaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttagcacagctcccccactattctttgtgagagatggcaatcagatttgtgaataaaaa 260

                                                                       
Query: 61  taataaaacgaaatttaaaagtttcttggaattagtgatggtttctcagggaatttccga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taataaaacgaaatttaaaagtttcttggaattagtgatggtttctcagggaatttccga 320

                                                                       
Query: 121 gacgcccttggcaaagctgctggctgtagaagcaggcctgctatgtagagccttcgcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacgcccttggcaaagctgctggctgtagaagcaggcctgctatgtagagccttcgcctg 380

                                                                       
Query: 181 gacaacgtgtggtcccatcatcccttcttatgtgtcatagacacagacatagaaaaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacaacgtgtggtcccatcatcccttcttatgtgtcatagacacagacatagaaaaaaag 440

                                                                       
Query: 241 attttacagtgttaactggccagacctgccccccccc--------ccccccccggagctc 292
           ||||||||||||||||||||||||||  |||||||||        |||||||||||||||
Sbjct: 441 attttacagtgttaactggccagacc--cccccccccgcccccccccccccccggagctc 498

                                                                       
Query: 293 ccggggactggaccaccaactaaagaatatgcatggagggacccatggctctggctgcat 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ccggggactggaccaccaactaaagaatatgcatggagggacccatggctctggctgcat 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 750
Length adjustment: 9
Effective length of query: 343
Effective length of database: 741
Effective search space:   254163
Effective search space used:   254163
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)