Query= MSMg01no511_j21.b1 MSMg01no511_j21.b1 CHROMAT_FILE:
MSMg01no511_j21.b1 PHD_FILE: MSMg01no511_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:32 2005
(534 letters)
>mm_chr9_122477566_122478499
Length = 934
Score = 986 bits (510), Expect = 0.0
Identities = 525/530 (99%)
Strand = Plus / Plus
Query: 5 gaattcagggcctttcctcgctgcgatcaggtgtgtgtagaggtgggcgttgatgtgagc 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagggcctggcctcgctgcgatcaggtgtgtgtagaggtgggcgttgatgtgagc 264
Query: 65 gagaggcaaagcccagaaagaatgcgacaaggcaaagcatgccgtcctgtcaaagaagga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagaggcaaagcccagaaagaatgcgacaaggcaaagcatgccgtcctgtcaaagaagga 324
Query: 125 accatgcagaatgccagttggaaaaggatttagaagagggtgctggagcctcggggacgc 184
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 325 accatgcagaatgccagttggagaaggatttagaggagggtgctggagcctcggggacgc 384
Query: 185 cctcccgtgcacctttcaggaggtgatgggcggcgaacgaacctccccggagcagtaacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctcccgtgcacctttcaggaggtgatgggcggcgaacgaacctccccggagcagtaacc 444
Query: 245 gaaccccgccacgcacggaaccaggtgagtgctggacccagagcggaggtgaggcctccc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaccccgccacgcacggaaccaggtgagtgctggacccagagcggaggtgaggcctccc 504
Query: 305 ggcgaccgccgcaagcgtgctgggcagcgtggttcgcagaggcggcgccgggtctcggaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggcgaccgccgcaagcgtgctgggcagcgtggttcgcagaggcggcgccgggtctcggaa 564
Query: 365 gctgcggcggagacgccaaggaggctgagagtgcggagagggtggggcgttgcggagatc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctgcggcggagacgccaaggaggctgagagtgcggagagggtggggcgttgcggagatc 624
Query: 425 ccgccggcgccagcctaggagcagcggctggctgagggcgcgctcacccaggcacgtggg 484
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccgccggcgccagccgaggagcagcggctggctgagggcgcgctcacccaggcacgtggg 684
Query: 485 tgtggagccaccggcgccgcccggcctgcgctctgcagcaccgcagcgcg 534
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtggagccaccggcgccgcccggcctgcgctctgcagcaccgcagcgcg 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_j21.g1 MSMg01no511_j21.g1 CHROMAT_FILE:
MSMg01no511_j21.g1 PHD_FILE: MSMg01no511_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:32 2005
(482 letters)
>mm_chr9_122690102_122690984
Length = 883
Score = 895 bits (463), Expect = 0.0
Identities = 478/483 (98%), Gaps = 1/483 (0%)
Strand = Plus / Minus
Query: 1 ttttagctatatttaagaaatagagatgaagataatctataataagaaaggagtcatttg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 683 ttttagctatatttaagaaatagagatgaagataatttataataagaaaggagtcatttg 624
Query: 61 aatacttagaaggatttgtttaagggaaacttaaaacagcggagagtgcttctgaactat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aatacttagaaggatttgtttaagggaaacttaaaacagcggagagtgcttctgaactat 564
Query: 121 ttcaggagaaaaagatcatttatgaattcttcagctagtagaacattaataaaagacata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttcaggagaaaaagatcatttatgaattcttcagctagtagaacattaataaaagacata 504
Query: 181 atgaattgtgtgtaaagagtcttcttttgttattctctcttagagataagagagattaaa 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atgaattatgtgtaaagagtcttcttttgttattctctcttagagataagagagattaaa 444
Query: 241 atcataccttgcaaaaaatctcaattaaagcaggtacagcattcctcaacttcatagctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atcataccttgcaaaaaatctcaattaaagcaggtacagcattcctcaacttcatagctg 384
Query: 301 ccacatactcaaatatttttagtaatattttcagagcaggctgaaggaaaaaaagaaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ccacatactcaaatatttttagtaatattttcagagcaggctgaaggaaaaaaagaaaca 324
Query: 361 aacaaacagaatttcatgctctcagtgtgtcttaaattttacaaattcatgaatactgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aacaaacagaatttcatgctctcagtgtgtcttaaattttacaaattcatgaatactgaa 264
Query: 421 aaatatgttgtctgtgaagtctacggcaggcagaaatggaaacgttaaattttttttt-c 479
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
Sbjct: 263 aaatatgttgtctgtgaagtctacggtaggcagaaatggaagcgttaaattttttttttc 204
Query: 480 aat 482
|||
Sbjct: 203 aat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 883
Length adjustment: 10
Effective length of query: 472
Effective length of database: 873
Effective search space: 412056
Effective search space used: 412056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
