BAC Information

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BAC

Clone NameMSMg01-512A14
Chromosome9 (Build37)
Map Location 121,841,991 - 122,073,807
singlet/doubletdoublet
Overlap geneC730027P07Rik, C85492, LOC100040121, Snrk
Upstream geneCtnnb1, Ulk4, Trak1, Cck, Lyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1
Downstream geneTmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512A14.T7 (MSMg01no512_a14.b1)MSMg01-512A14.TJ (MSMg01no512_a14.g1)
ACCAG585090AG585091
length752773
length of high quality
(start - end)		680 (37 - 716)549 (68 - 616)
definitionCHROMAT_FILE: MSMg01no512_a14.b1 PHD_FILE: MSMg01no512_a14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:03 2005CHROMAT_FILE: MSMg01no512_a14.g1 PHD_FILE: MSMg01no512_a14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,073,135 - 122,073,807)(121,841,991 - 121,842,536)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGG
ATGCTACTACTTGGTCAGAGTCGGCCACCGAGAGCTGTGTGGGTGAATGT
TCTGAAATCCAGTCAACAAAAGAGGTGGAATAGCAACTCCCCACTTCTGC
AGGTAAAGCCCCCGAGACAGGTCACAGGTTTGAAGGACAGTGAGGGTTCA
TTCCACCACGCAAGCCTGACGATCAACTTCAGTGAGGGCTCTGGTCCGAG
ACCTCAAAAGAAGCCCTGCTGGTCTAACTCAAAGAGCCCCTCCTCACATG
ACCCTCAGGAGGTCGACGGGACTCAGGTAAATCAGAGACGCTTTGGACCT
GAGATCCAACAGCTAGTAAGTCAACTAAGTGCTCTAGCTTCCAACCTCTG
AAATCCTAAATGCTCCTATTTAAAAAAAGCTTTCCAAGTGATTGCAGGGG
AATCCACACTGCTCTTGGAGAAAATCTTGAAGGAAAAAAGAGTGAGATGC
CTAGGTATTGGGAACACCCACTACCACGTACAGCAGAGAAGTGTGCTGTA
ACCTCTGTGGAAAGCAGCCATCAGCACCATGAGGTCAAGTACCCTCCTAC
TTGGAGAACTAGGAACCATCAACAAACAGTTCCCTACTCAAAATGTTAAC
TTACAAATATCAGCAAAGGTATTTTTCTCACCTAAACTGGGCCTTGATGT
TGCTGGGGCTAGCAGACCTGGTCTGGATTTCTTTCTCTTGCTTTTCTCTC
AG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCAGATTGTCCTCTAACCTTCCCATGCACAGAC
TCACATGTACATACATGAAACATGCTCAAACACACATGTGCACACACATG
AACAAGAATACATCTACACACACGCACACACACATGCACAAATATACATC
TATACGCATGCACACATACACAAATACACACATGCACACACATAACTGGC
ACAAACACATGTACACACACGTACACACATGTACACACTCAGTTTTTTAG
AAGGAGAGAACATCTTAGGGCTCAAGGAGTCAGGACAGAGATAGAGACCA
TTAATTTCTCTTTACCATTCTCTCAGGCTACAAATCATTTCTCACTTCCC
AGAATCCTCTAAATAGCTACTAGTTCTGGAGACGACCAGCCTCAGCAAGA
AAGAGCACAGCGGGTTCAGCTCTAAACATGGGCATGTCACTGTTGGCCTC
ATTGATAATACTGGTTTTTCACAGTGTTAGAAATACTGTTCAGGGTCACA
AAGAAAGAGACCACCTAACTAGGGCTTTATCATTGTGATAGAAAAATGAC
CAGAAGCGACTTGTGGGAGAAAGGGCTTATTTCATTTTACATTTCCATCT
TACAGGTTATCACTGAGGGAAGTTAGGGCAGGAGCTTAATTAAGCAGGAC
ACGGACTGAAGCAGAAACCATGGAGTGGCGCTCCTTGCTGGCTTGGTCTT
ATGGCTTGCTCATCCTACTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_a14.b1 MSMg01no512_a14.b1 CHROMAT_FILE:
MSMg01no512_a14.b1 PHD_FILE: MSMg01no512_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:03 2005
         (680 letters)



>mm_chr9_122072928_122074007
          Length = 1080

 Score = 1216 bits (629), Expect = 0.0
 Identities = 662/673 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttcatggatgctactacttggtcagagtcggccaccgagagctgtgtgggtgaatgttct 67
           |||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 ttcatggagggtattacttggtcagagtcggccaccgagagctgtgtgggtgaatgttct 821

                                                                       
Query: 68  gaaatccagtcaacaaaagaggtggaatagcaactccccacttctgcaggtaaagccccc 127
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 820 gaaatccagtcaacaaaagaggtggaataacaactccccacttctgcaggtaaagccccc 761

                                                                       
Query: 128 gagacaggtcacaggtttgaaggacagtgagggttcattccaccacgcaagcctgacgat 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gagacaggtcacaggtttgaaggacagtgagggttcattccaccacgcaagcctgacgat 701

                                                                       
Query: 188 caacttcagtgagggctctggtccgagacctcaaaagaagccctgctggtctaactcaaa 247
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 700 caacttcagtgagggctctggtccgagacctcaaaagaagccctgctggtctaactcaga 641

                                                                       
Query: 248 gagcccctcctcacatgaccctcaggaggtcgacgggactcaggtaaatcagagacgctt 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 640 gagcccctcctcacatgaccctcaggaggtcgacgggactcaggtaaatcagagatgctt 581

                                                                       
Query: 308 tggacctgagatccaacagctagtaagtcaactaagtgctctagcttccaacctctgaaa 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tggacctgagatccaacagctagtaagtcaactaagtgctctagcttccaacctctgaaa 521

                                                                       
Query: 368 tcctaaatgctcctatttaaaaaaagctttccaagtgattgcaggggaatccacactgct 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tcctaaatgctcctatttaaaaaaagctttccaagtgattgcaggggaatccacactgct 461

                                                                       
Query: 428 cttggagaaaatcttgaaggaaaaaagagtgagatgcctaggtattgggaacacccacta 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 cttggagaaaatcttgaaggaaaaaagagtgagatgcctaggtattgggaacacccacta 401

                                                                       
Query: 488 ccacgtacagcagagaagtgtgctgtaacctctgtggaaagcagccatcagcaccatgag 547
           ||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 400 ccacgtatagcagagaagcgtgctgtaacctctgtggaaagcagccatcggcaccatgag 341

                                                                       
Query: 548 gtcaagtaccctcctacttggagaactaggaaccatcaacaaacagttccctactcaaaa 607
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gtcaaggaccctcctacttggagaactaggaaccatcaacaaacagttccctactcaaaa 281

                                                                       
Query: 608 tgttaacttacaaatatcagcaaaggtatttttctcacctaaactgggccttgatgttgc 667
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tgttaacttactaatatcagcaaaggtatttttctcacctaaactgggccttgatgttgc 221

                        
Query: 668 tggggctagcaga 680
           |||||||||||||
Sbjct: 220 tggggctagcaga 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no512_a14.g1 MSMg01no512_a14.g1 CHROMAT_FILE:
MSMg01no512_a14.g1 PHD_FILE: MSMg01no512_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:03 2005
         (549 letters)



>mm_chr9_121841791_121842739
          Length = 949

 Score = 1048 bits (542), Expect = 0.0
 Identities = 545/546 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagattgtcctctaaccttcccatgcacagactcacatgtacatacatgaaacatgctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagattgtcctctaaccttcccatgcacagactcacatgtacatacatgaaacatgctc 260

                                                                       
Query: 61  aaacacacatgtgcacacacatgaacaagaatacatctacacacacgcacacacacatgc 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 aaacacacatgtgcacacacatgaacaagtatacatctacacacacgcacacacacatgc 320

                                                                       
Query: 121 acaaatatacatctatacgcatgcacacatacacaaatacacacatgcacacacataact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaatatacatctatacgcatgcacacatacacaaatacacacatgcacacacataact 380

                                                                       
Query: 181 ggcacaaacacatgtacacacacgtacacacatgtacacactcagttttttagaaggaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcacaaacacatgtacacacacgtacacacatgtacacactcagttttttagaaggaga 440

                                                                       
Query: 241 gaacatcttagggctcaaggagtcaggacagagatagagaccattaatttctctttacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaacatcttagggctcaaggagtcaggacagagatagagaccattaatttctctttacca 500

                                                                       
Query: 301 ttctctcaggctacaaatcatttctcacttcccagaatcctctaaatagctactagttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctctcaggctacaaatcatttctcacttcccagaatcctctaaatagctactagttct 560

                                                                       
Query: 361 ggagacgaccagcctcagcaagaaagagcacagcgggttcagctctaaacatgggcatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggagacgaccagcctcagcaagaaagagcacagcgggttcagctctaaacatgggcatgt 620

                                                                       
Query: 421 cactgttggcctcattgataatactggtttttcacagtgttagaaatactgttcagggtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cactgttggcctcattgataatactggtttttcacagtgttagaaatactgttcagggtc 680

                                                                       
Query: 481 acaaagaaagagaccacctaactagggctttatcattgtgatagaaaaatgaccagaagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaaagaaagagaccacctaactagggctttatcattgtgatagaaaaatgaccagaagc 740

                 
Query: 541 gacttg 546
           ||||||
Sbjct: 741 gacttg 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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