Query= MSMg01no512_k24.b1 MSMg01no512_k24.b1 CHROMAT_FILE:
MSMg01no512_k24.b1 PHD_FILE: MSMg01no512_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:56 2005
(588 letters)
>mm_chr9_99254318_99255305
Length = 988
Score = 926 bits (479), Expect = 0.0
Identities = 503/511 (98%)
Strand = Plus / Minus
Query: 5 gaattcacaaagtttgatgctggaccatcaaagcagttgatggccatgtgggaccaagga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaattcacaaagtttgatgctggaccatcaaagcagttgatggccatgtgggaccaagga 452
Query: 65 gaatttcgtatgttgaggtgctcacagctctaagtgtcatacaagtcaatttggagttga 124
||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 451 gaatttcgtatcttgaggtgctctcagctctaagtgtcatacaagttaatttggagttga 392
Query: 125 gcctagccttaggaaaaaagagaaggccaagtcatttcctctgtgtttcggtcccatgtc 184
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 391 gcctagccttaggaaagaagaggaggccaagtcatttcctctgtgtttcggtcccatgtc 332
Query: 185 ttggtgatgcttcatggacttacagtgttctagaacggggttgggcaataagtatgacag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttggtgatgcttcatggacttacagtgttctagaacggggttgggcaataagtatgacag 272
Query: 245 agcgtaggtgtccttttcctccaagcccagcacagggattttaggcatctgtgtgttcat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 agcgtaggtgtccttttcctccaagcccagcacagggattttaggcatctgtgtgttcat 212
Query: 305 cctctgctcagtcaccaaacatttatagagggcttgcaatgtgtgaggcacggttctgca 364
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 211 cctctgctcagtcaccaaacatttatagagggcttgcaatgtgtgagacatggttctgca 152
Query: 365 ggatgagccacagacatgagtgtcccgtggcctctgccctcgaggaaccatggagcagag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ggatgagccacagacatgagtgtcccgtggcctctgccctcgaggaaccatggagcagag 92
Query: 425 tgggcacaaaggcccgagagaacagtctcttccgagacatgtcagaggtccaagatattg 484
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 91 tgggcacaaaggcccgagagaacagtctcttccaagacatgtcagaggtccaagatattg 32
Query: 485 cgcagcttctgggcgggatctaaagcagaca 515
|||||||||||||||||||||||||||||||
Sbjct: 31 cgcagcttctgggcgggatctaaagcagaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_k24.g1 MSMg01no512_k24.g1 CHROMAT_FILE:
MSMg01no512_k24.g1 PHD_FILE: MSMg01no512_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:56 2005
(517 letters)
>mm_chr9_99085508_99086424
Length = 917
Score = 862 bits (446), Expect = 0.0
Identities = 503/530 (94%), Gaps = 13/530 (2%)
Strand = Plus / Plus
Query: 1 acagaagtccatctttgcctctccagtgctaggactaaaggtgtgtgccaccttgtctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 acagaagtccatctttgcctctccagtgctaggactaaaggtgtgtgccaccttgtctgt 247
Query: 61 ctggcttcttgacaggttttgaatttgtcctcatctgttcgtgtgatgactgtgagaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctggcttcttgacaggttttgaatttgtcctcatctgttcgtgtgatgactgtgagaaag 307
Query: 121 ttcccgaaatacactgcatactcaagtgtgtgtgctgagaggagaaatggaggagggaac 180
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ttcccgacatacactgcacactcaagtgtgtgtgctgagaggagaaatggaggagggaat 367
Query: 181 tgaactcagcggagacatgaagttccctttgatgtctaaggtgctaactcgtgtgtgtag 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tgaactcagccgagacatgaagttccctttgatgtctaaggtgctaactcgtgtgtgtag 427
Query: 241 ctcactgagaccggagaacacgccttaccctcaatctgttcaaacaccaaagcccctgga 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 428 ctcactgagaccggagaacacgccttaccctcagtctgttcaaacaccaaagcccctgga 487
Query: 301 agaagcgtttgcttggccaagcttctttcacggtccag-------------gacatttct 347
|||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 488 agaagcgtttgcttggccaagcttctttcacggtccagaagggcagtccaggacatttct 547
Query: 348 gttggaaggggattccaagcacagatttgtggatcaacaagttggtgtccaggaattact 407
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 548 gttggaaggggattccaagcacagatttgtgaatcaacaagttggtgtccaggaattacc 607
Query: 408 aatgaagtgcgtacaaaggttaattgaccttaaaataccaccaattattggtttgtttgt 467
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 608 aatgaagtgagtacaaaggttaattgaccttaaaataccaccaatcattggtttgtttgt 667
Query: 468 ttgttttttgagacagagtttctctgtatagcccttgttgtcttaaacct 517
|||| |||||||||||||||| ||||| ||||||| |||||| |||||||
Sbjct: 668 ttgtgttttgagacagagtttttctgtgtagccctggttgtcctaaacct 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
