BAC Information

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BAC

Clone NameMSMg01-512M14
Chromosome9 (Build37)
Map Location 98,516,268 - 98,685,927
singlet/doubletdoublet
Overlap genenone
Upstream geneClstn2, LOC667298, Nmnat3, Rbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22
Downstream geneEG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512M14.T7 (MSMg01no512_m14.b1)MSMg01-512M14.TJ (MSMg01no512_m14.g1)
ACCAG585665AG585666
length769778
length of high quality
(start - end)		617 (39 - 655)494 (67 - 560)
definitionCHROMAT_FILE: MSMg01no512_m14.b1 PHD_FILE: MSMg01no512_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:04 2005CHROMAT_FILE: MSMg01no512_m14.g1 PHD_FILE: MSMg01no512_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,685,314 - 98,685,927)(98,516,268 - 98,516,761)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
GTTTACTGTAAACCTGGATAAAAGCCTGTGGCTGGGCATGTCATAAGTTC
TAGAGGGGAGCTATTGCTGGTTTTCGTTTTCTGTTTTTGTTTTTGTTTTC
CTAAATGGGCATGATATGTCTGTTAAATTGCCCTGTAAATAAATATGTCT
ATGTTACTGCTGTCAGCTTTGGCCAGAGCAGCTTCTTTGAAGTGTTTAGT
GATTTAACAGCAAAAAATGCTATAAATACATTAAGAAATATCAAAAACCT
AGAAATAAATTTAATAAAACATCCATGCAATCCATTAGAAGAAAGCTACT
GAATGCTACTGAGAGAAAATAAAGCAGCCCTAACTGAATATAGAGACATC
TATGTCCACTGACTGGAGAGTGACTATAAAAAAGGTAGCAGGCATTTGAG
TATGCAGTGGTCCCTCAGAGTGTATTACAGGTTTGCACTTAAGACTGTGT
GGTGTTGACATAGGATAGACATGGGACCCAGAAGCAGAGTGGGCCACACA
GCCATTGACTTGTGACAAAGGTGTCACTGTAGGAAGTGAAGATGGTTACA
TCAATAAACAGTTTGAGGAAAGTGGGTTTCTACGTGTGTCTAATGGCTTT
TTAATAAGTGTGTTACAGTTTTCTCTTAACCCAGCTAGCTCCTAAATAGT
TGAGACTGGATTAATGTATTTAACAAGTTTAAGGGCACTATAACCGAGCA
GTATTACTCTATTTTAATN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACAGTGGCGAGAGCTTTGGGTGGCTTTGGAAAAC
TTGAATACAGCTTTGAGCCCCAGCGACAGAAAGGCAAGATTATGACACTT
GGGAGAACTAAGTCAGCCTATAGACCCACGTGTAGGAGGCCTCTGGAAGA
AAGGTAGAGTATGTTCATGTCTCACGCTCCACCCTCCTGCAGGATGAAGG
GAGAAGCTGGGGCTCAAGGAGACTCGGCTTCTACAGTCTGGGCTTAAGAA
AAGGTACATTCTGAGAGTCAGGAGCAATTTTACATGTCATGTGATCTTCT
TTGGATTGGAGCCTGGCAAGACTCCCAAGTCAGGAACATGTCAGAAGCCA
CCCCCCTTGTGTGTCCCTTGTCCCCCTTTAGGGTCTCCTAGAAAATCTCC
AAAGCACTCTTTGCCAGTCCATGTCCTTCCGTGTGCAGTATGGGGCGAGA
AGCACTCAAAGCGGCACTTAGGGCTATCATAGGATTAGTGGGAAAGGGCA
GTATGCCATTTCGTGAAGGGTTTTGCTCCACAGTCGGGGAGAAAAGATGC
AATGTGTTCTTACTGCACACAAGCCAAACCTCCGCCCTCAAAGCCNAGTG
AGTTCAAGACACTGAGCCCCAAGCAAACCTGAAGACTGAGGCTGGGATTC
GCGGGAGGAGACTTTGAAGTGAGCCTCCCCCACCCTCCTGGTTCGGGAGG
TCCCTCGCCCCGCCGATAAAGAGGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_m14.b1 MSMg01no512_m14.b1 CHROMAT_FILE:
MSMg01no512_m14.b1 PHD_FILE: MSMg01no512_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:04 2005
         (617 letters)



>mm_chr9_98685081_98686097
          Length = 1017

 Score = 1187 bits (614), Expect = 0.0
 Identities = 614/614 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatgtttactgtaaacctggataaaagcctgtggctgggcatgtcataagttct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 ggaattcatgtttactgtaaacctggataaaagcctgtggctgggcatgtcataagttct 788

                                                                       
Query: 64  agaggggagctattgctggttttcgttttctgtttttgtttttgttttcctaaatgggca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 agaggggagctattgctggttttcgttttctgtttttgtttttgttttcctaaatgggca 728

                                                                       
Query: 124 tgatatgtctgttaaattgccctgtaaataaatatgtctatgttactgctgtcagctttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tgatatgtctgttaaattgccctgtaaataaatatgtctatgttactgctgtcagctttg 668

                                                                       
Query: 184 gccagagcagcttctttgaagtgtttagtgatttaacagcaaaaaatgctataaatacat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gccagagcagcttctttgaagtgtttagtgatttaacagcaaaaaatgctataaatacat 608

                                                                       
Query: 244 taagaaatatcaaaaacctagaaataaatttaataaaacatccatgcaatccattagaag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 taagaaatatcaaaaacctagaaataaatttaataaaacatccatgcaatccattagaag 548

                                                                       
Query: 304 aaagctactgaatgctactgagagaaaataaagcagccctaactgaatatagagacatct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aaagctactgaatgctactgagagaaaataaagcagccctaactgaatatagagacatct 488

                                                                       
Query: 364 atgtccactgactggagagtgactataaaaaaggtagcaggcatttgagtatgcagtggt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 atgtccactgactggagagtgactataaaaaaggtagcaggcatttgagtatgcagtggt 428

                                                                       
Query: 424 ccctcagagtgtattacaggtttgcacttaagactgtgtggtgttgacataggatagaca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ccctcagagtgtattacaggtttgcacttaagactgtgtggtgttgacataggatagaca 368

                                                                       
Query: 484 tgggacccagaagcagagtgggccacacagccattgacttgtgacaaaggtgtcactgta 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgggacccagaagcagagtgggccacacagccattgacttgtgacaaaggtgtcactgta 308

                                                                       
Query: 544 ggaagtgaagatggttacatcaataaacagtttgaggaaagtgggtttctacgtgtgtct 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ggaagtgaagatggttacatcaataaacagtttgaggaaagtgggtttctacgtgtgtct 248

                         
Query: 604 aatggctttttaat 617
           ||||||||||||||
Sbjct: 247 aatggctttttaat 234


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no512_m14.g1 MSMg01no512_m14.g1 CHROMAT_FILE:
MSMg01no512_m14.g1 PHD_FILE: MSMg01no512_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:04 2005
         (494 letters)



>mm_chr9_98516068_98516961
          Length = 894

 Score =  917 bits (474), Expect = 0.0
 Identities = 489/494 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagtggcgagagctttgggtggctttggaaaacttgaatacagctttgagccccagcga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagtggcgagagctttgggtggctttggaaaacttgaatacagctttgagccccagcga 260

                                                                       
Query: 61  cagaaaggcaagattatgacacttgggagaactaagtcagcctatagacccacgtgtagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaaaggcaagattatgacacttgggagaactaagtcagcctatagacccacgtgtagg 320

                                                                       
Query: 121 aggcctctggaagaaaggtagagtatgttcatgtctcacgctccaccctcctgcaggatg 180
           ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 aggcctctggaagaaaggtggagtctgttcatgtctcacgctccaccctcctgcaggatg 380

                                                                       
Query: 181 aagggagaagctggggctcaaggagactcggcttctacagtctgggcttaagaaaaggta 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 aagggagaagctggggctcaaggagactcggcttctacagtctgggctcaagaaaaggta 440

                                                                       
Query: 241 cattctgagagtcaggagcaattttacatgtcatgtgatcttctttggattggagcctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattctgagagtcaggagcaattttacatgtcatgtgatcttctttggattggagcctgg 500

                                                                       
Query: 301 caagactcccaagtcaggaacatgtcagaagccaccccccttgtgtgtcccttgtccccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagactcccaagtcaggaacatgtcagaagccaccccccttgtgtgtcccttgtccccc 560

                                                                       
Query: 361 tttagggtctcctagaaaatctccaaagcactctttgccagtccatgtccttccgtgtgc 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 tttagggtctcctagaaaatctccaaagcactctttgccggtccatgtccttccgtgtgc 620

                                                                       
Query: 421 agtatggggcgagaagcactcaaagcggcacttagggctatcataggattagtgggaaag 480
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtatggggcgagaatcactcaaagcggcacttagggctatcataggattagtgggaaag 680

                         
Query: 481 ggcagtatgccatt 494
           ||||||||||||||
Sbjct: 681 ggcagtatgccatt 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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