Query= MSMg01no513_a08.b1 MSMg01no513_a08.b1 CHROMAT_FILE:
MSMg01no513_a08.b1 PHD_FILE: MSMg01no513_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:23 2005
(672 letters)
>mm_chr9_58580756_58581827
Length = 1072
Score = 1207 bits (624), Expect = 0.0
Identities = 657/672 (97%), Gaps = 7/672 (1%)
Strand = Plus / Plus
Query: 1 atcatttgtgatttattatcagtaattgtttgaattctatatctattttatatacttata 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcatttgtgatttattatcggtaattgtttgaattctatatctattttatatacttata 260
Query: 61 catccaaagtggcataaaaattacttaggcacacagggttgggagtagaaaaggcttaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catccaaagtggcataaaaattacttaggcacacagggttgggagtagaaaaggcttaag 320
Query: 121 aagccgtgcttatagaatttccaaagattaaatgacagtgcgaggtcagatgtcagcaga 180
|||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||
Sbjct: 321 aagccgtgcttatagaattttcaaagatcaaatgacagtgcaaggtcagatgtcagcaga 380
Query: 181 atgcttggctttcattcaccattcagtaaaactttatgagacatcagccagatcccatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcttggctttcattcaccattcagtaaaactttatgagacatcagccagatcccatgc 440
Query: 241 cagggttggacatgcagtatttacacactaagcaacagttaattttattacttccactaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagggttggacatgcagtatttacacactaagcaacagttaattttattacttccactaa 500
Query: 301 tccattttctgttgacataatgaaattcctcagactggcactttataaacaggctcattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccattttctgttgacataatgaaattcctcagactggcactttataaacaggctcattt 560
Query: 361 agctcatggttttggaggctcagtgtctaagattaagtagctctcagtaggtctggaggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agctcatggttttggaggctcagtgtctaagattaagtagctctcagtaggtctggaggc 620
Query: 421 ttgcttggcaatattctaacacaaaaaggaaatatggctgagtatataaggcaccagtta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgcttggcaatattctaacacaaaaaggaaatatggctgagtatataaggcaccagtta 680
Query: 481 cacagggtgacgacctttagtttttctgagataacccacgacgtgagaccaccactaatc 540
|||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 681 cacagggtgacgacctttagtttttctgagataat-------gtgagaccaccattaatc 733
Query: 541 tcttctgagtgtggtggtgatggcatggcctcattagcatgcacttcacctccaacacat 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tcttctgattgtggtggtgatggcatggcctcattagcatgcacttcacctccaacacat 793
Query: 601 cagacaccaggttcacccaccagcacaacaatctttgaggggcacatggagaacacagta 660
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 cagacaccaggttcactcaccagcacaacaatctttgaggggcacatggagaacacagta 853
Query: 661 catccttacaaa 672
||||||||||||
Sbjct: 854 catccttacaaa 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_a08.g1 MSMg01no513_a08.g1 CHROMAT_FILE:
MSMg01no513_a08.g1 PHD_FILE: MSMg01no513_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:23 2005
(508 letters)
>mm_chr9_58801085_58801993
Length = 909
Score = 826 bits (427), Expect = 0.0
Identities = 463/475 (97%), Gaps = 3/475 (0%)
Strand = Plus / Minus
Query: 1 acgtccacctcagcactggggcttcagtgtgtgtttgtgactacttctgtaactattgcc 60
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 475 acgtccacctaagcactggggcttcagtgtgtgtttgtgattacttctgtaactattacc 416
Query: 61 agtgtaaatgggtggctgtgttaggagcatcctaatggagcttttatctgaatgtgtttg 120
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 agtgtaaatggatgtctgtgttaggagcatcctaatggagcttttatctgaatgtgtttg 356
Query: 121 gtggtataatcattttactactagtatatgtttttctctgattttgagaatatttatggg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 355 gtggtataatcattttactactagtatatgtttttctctgattttgagaatatttaaggg 296
Query: 181 ctttgggaa-tttttttatgatcatactgacaatacactggcaagtcatagggtattaga 239
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 295 ctttgggaattttttttatgatcatactgacaatacattggcaagtcatagggtattaga 236
Query: 240 agaatataagtcccatctttattaaatttgtgtcctatttttacattttattttttattt 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 235 agaatataagtcccatctttattaaatttgtgtcctatttttacattttattttttatgt 176
Query: 300 acttaaaaataatttacttgtatgtatgtgtgcaagcttgtcagtgtgtgtaccatttgc 359
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 175 acttaaaaataatttacttgtatgtgtgtgtgcaagcttgtcagtgtgtgtaccatttgc 116
Query: 360 ccttggagactaggcttcaaattccttggaattggactttaggtgattgtgagatgcttg 419
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 115 ccttggagactaggcttcaaattccttggaattggac-ttaggtgattgtgagatgcttg 57
Query: 420 gtgtgggntgtggggacttgcaagagcaagtccttaacccctgagctgtatatct 474
||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 gtgtggg-tgtggggacttgcaagagcaagtccttaacccctgagctgtatatct 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 909
Length adjustment: 10
Effective length of query: 498
Effective length of database: 899
Effective search space: 447702
Effective search space used: 447702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
