Query= MSMg01no513_b21.b1 MSMg01no513_b21.b1 CHROMAT_FILE:
MSMg01no513_b21.b1 PHD_FILE: MSMg01no513_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:30 2005
(628 letters)
>mm_chr9_73565150_73566177
Length = 1028
Score = 905 bits (468), Expect = 0.0
Identities = 525/546 (96%), Gaps = 7/546 (1%)
Strand = Plus / Minus
Query: 85 tttcttctttatttgggttctcatacccaggcaagtgaccctttctcctgctctgagggg 144
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1028 tttcttctttacttgggttctcatacccaggcaagtgaccctttctcctgctctgaggtg 969
Query: 145 acaaggaaggagtaaacagctcaccttttttttctttattactcatattttacttaaagc 204
|||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 968 acaaggaaggtgtaaacagctcacc-tttttttctttattactcatattttagttaaagc 910
Query: 205 agtgcctaagacacaactatacagagctggagagattgctcagtggttaagaacactgac 264
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 909 agttcctaagacacaactatacagagatggagagattgctcagtggttaagaacactgac 850
Query: 265 tcctcttctagagatcctgagttcaggttagtgggatctgatgcccttctcgggtgtgtc 324
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 849 tcctcttctagagatcctgagttcaggttagtgggatctgatgcctttctcgggtgtttc 790
Query: 325 tgaagacagctacagtgtactcatatacaaaaataagtaaatctt----aaaaaaaaaga 380
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 789 tgaagacagctacagtgtactcatatacaaaaataagtaaatctttaaaaaaaaaaaaga 730
Query: 381 tgcaacagtacaccatgaaacatttgttaaattaaactgcctggactcaatgtcataaac 440
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 729 tgcaacagtacaccatgaaacatttgttaaattaaactgcctggactcaatgtcctaaac 670
Query: 441 tacagttgtctcaaactatacccaccatcatgcaaattatgttcctttggtgctagactc 500
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 669 tacagttgtctcaaactatacccaccatcatgcacattatgttcctttggtgctaggctc 610
Query: 501 caagatgtaaatcaaggatatagaaatgatgggaggccgaggcaggcagatttctga-tt 559
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 609 caagatgtaaatcaaggatatagaaatgatgggaggccaaggcaggcagatttctgagtt 550
Query: 560 tcgaggccagcctagtctatagagtgagttccaggacagccagggctgcacagagaaacc 619
| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 t-gaggccagcctggtctacagagtgagttccaggacagccagggctgcacagagaaacc 491
Query: 620 ctgtct 625
||||||
Sbjct: 490 ctgtct 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_b21.g1 MSMg01no513_b21.g1 CHROMAT_FILE:
MSMg01no513_b21.g1 PHD_FILE: MSMg01no513_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:30 2005
(578 letters)
>mm_chr9_73372336_73373312
Length = 977
Score = 1013 bits (524), Expect = 0.0
Identities = 563/576 (97%), Gaps = 1/576 (0%)
Strand = Plus / Plus
Query: 3 cctgcagggggtgggcatatggtcccagccagaataattagagaatgattaaaatggaga 62
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 203 cctgcagggggtgggcatatggttccagccagaataattagagaatgattaaaatggag- 261
Query: 63 acaggagtcagcttgatcaatatacggatggacaatcggcatttctacaggacacatgtc 122
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 262 acaggagtcagcgtgatcaatatacggatggacactcggcatttctacaggacacatgtc 321
Query: 123 attcttttcaacccaaagcatggattgattgttctcataaaatccacgaggggctgagct 182
|||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 322 attcttttcaccccaaagcatggattgattgttctcgtaaaatccatgaggggctgagct 381
Query: 183 tgaatcctaaagttttatttttctttcagaatgtgttctagattgtctcctcctctctag 242
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 382 tgaatcctaaagttttatttttcttttagaatgtgttctagattgtctcctcctctctag 441
Query: 243 cactattttttcccctacattgccaagaatatccccataactctacatatcaggcaattc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cactattttttcccctacattgccaagaatatccccataactctacatatcaggcaattc 501
Query: 303 ttgctaaaattttgaaaactttcagaaaaaaatagttttgatttgattttttttctgtat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttgctaaaattttgaaaactttcagaaaaaaatagttttgatttgattttttttctgtat 561
Query: 363 ttgatgttgttattgtcacctctccatatcattttatgacaccaggtatggtaaaggtgg 422
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 562 ttgatgttgttattgtcacctctccatatcattttatgacaccaggtatggtgaaggtgg 621
Query: 423 ccctggactcagaacaatgaagtgggggagtcaaagtagccagcagttcttcattacata 482
| |||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct: 622 cactggactcagaacaatgaggtgggggagtcaaagcagccagcagctcttcattacata 681
Query: 483 ggtgtgcaagatgactgatgtctcagtgaggagtggaaccagtagatacaattctctctc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ggtgtgcaagatgactgatgtctcagtgaggagtggaaccagtagatacaattctctctc 741
Query: 543 tctctctctctctctctctctctctctctctctctc 578
||||||||||||||||||||||||||||||||||||
Sbjct: 742 tctctctctctctctctctctctctctctctctctc 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 977
Length adjustment: 10
Effective length of query: 568
Effective length of database: 967
Effective search space: 549256
Effective search space used: 549256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
